Structure of PDB 7yoq Chain B Binding Site BS01

Receptor Information
>7yoq Chain B (length=431) Species: 243232 (Methanocaldococcus jannaschii DSM 2661) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MMEKLKEIEKVTKAIKEKILNHYGYIRVITHHDTDGLSSGGILAKMLMRT
NKLFHLTVVEHLSKEVIEKLAKENEVNKPLFIFADMGSGQIEEIIKHNFN
AIILDHHPPVIKDSFINENIIQLNPHIFGVDGSREITASGVCYLVAREFG
YYDLSVLAIVGIIGDMQYNPLLGLNKFIVNEAREYRYVKIMNDIVYNIYD
VEIYKAIAYCTKPYIPDLASEGKAFKFLKDIGIDPNKKQLDDTDKKKLLS
AIIFKYPKIENLLIDRYLIEHKVRDAFLLSEMLNAVGRNGLFAVGIGICL
EDDECIKIGNQILWEYKKNLINELKSVKLKKLNNIYYFEGKKGMIGIIAS
ILVDDKPVIGYHIEGDIAKFSARGNRDLVNRGLNLSVAMAVAKEFGGNGG
GHDVASGAVVSKDKVQEFLKRVDEIIGEQLR
Ligand information
Ligand IDIY0
InChIInChI=1S/C9H10N3O8P/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)
InChIKeyKCVPKYRTVHKUFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.385NC1=NC(=O)N(C=C1)c2oc(CO[P](O)(O)=O)c(O)c2O
OpenEye OEToolkits 2.0.7C1=CN(C(=O)N=C1N)c2c(c(c(o2)COP(=O)(O)O)O)O
FormulaC9 H10 N3 O8 P
Name[5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)furan-2-yl]methyl dihydrogen phosphate
ChEMBL
DrugBank
ZINC
PDB chain7yoq Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7yoq The structure of nuclease RecJ2 from Methanocaldococcus jannaschii
Resolution2.265 Å
Binding residue
(original residue number in PDB)		K369 S371 R373 G400 G401 S406
Binding residue
(residue number reindexed from 1)		K369 S371 R373 G400 G401 S406
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding

View graph for
Molecular Function
External links
PDB RCSB:7yoq, PDBe:7yoq, PDBj:7yoq
PDBsum7yoq
PubMed
UniProtQ58241|Y831_METJA Uncharacterized protein MJ0831 (Gene Name=MJ0831)

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