Structure of PDB 7y10 Chain B Binding Site BS01

Receptor Information
>7y10 Chain B (length=276) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LTIEDIHDVEELRAVDEFRNLLVSENLLPPTLDDYHIMLRFLKARKFDIG
KTKLMWSNMIKWRKDFGTDTIFEDFEFEEFDEVLKYYPHGYHGVDKEGRP
VYIERLGLVDPAKLMQVTTVERFIRYHVREFEKTVNIKLPACCIAAKRHI
DSSTTILDVQGVGFKNFSKPARDLIIQLQKIDNDNYPETLHRMFIINGGS
GFKLVWATVKQFLDPKTVTKIHVIGNKYQNKLLEIIDASQLPDFLGGTCT
CADRGGCMRSDKGPWNDPEILKMLQS
Ligand information
Ligand IDPX6
InChIInChI=1S/C35H69O8P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-34(36)41-31-33(32-42-44(38,39)40)43-35(37)30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h33H,3-32H2,1-2H3,(H2,38,39,40)/p-1/t33-/m1/s1
InChIKeyPORPENFLTBBHSG-MGBGTMOVSA-M
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P@@](=O)(O)[O-])OC(=O)CCCCCCCCCCCCCCC
ACDLabs 10.04O=P([O-])(O)OCC(OC(=O)CCCCCCCCCCCCCCC)COC(=O)CCCCCCCCCCCCCCC
CACTVS 3.341CCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P](O)([O-])=O)OC(=O)CCCCCCCCCCCCCCC
OpenEye OEToolkits 1.5.0CCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)[O-])OC(=O)CCCCCCCCCCCCCCC
CACTVS 3.341CCCCCCCCCCCCCCCC(=O)OC[CH](CO[P](O)([O-])=O)OC(=O)CCCCCCCCCCCCCCC
FormulaC35 H68 O8 P
Name1,2-DIPALMITOYL-SN-GLYCERO-3-PHOSPHATE
ChEMBL
DrugBank
ZINC
PDB chain7y10 Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7y10 Arabidopsis Sec14 proteins (SFH5 and SFH7) mediate interorganelle transport of phosphatidic acid and regulate chloroplast development.
Resolution2.1 Å
Binding residue
(original residue number in PDB)		Y163 E180 F207 S229 T231 L233 I251 Q255 T265 L266 M269 F278
Binding residue
(residue number reindexed from 1)		Y87 E104 F131 S153 T155 L157 I175 Q179 T189 L190 M193 F202
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7y10, PDBe:7y10, PDBj:7y10
PDBsum7y10
PubMed36716376
UniProtQ8GXC6|SFH5_ARATH Phosphatidylinositol/phosphatidylcholine transfer protein SFH5 (Gene Name=SFH5)

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