Structure of PDB 7xer Chain B Binding Site BS01

Receptor Information
>7xer Chain B (length=614) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PNRFDRDRLFSVVSRGVPEELTGLLEYLRRTSKYLTDSAYTEGSTGKTCL
MKAVLNLQDGVNACILPLLQIDRDSGNPQPLVNAQCTDEFYRGHSALHIA
IEKRSLWCVKLLVENGANVHIRACGRFFQKHQGTCFYFGELPLSLAACTK
QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMY
DSLLQMGARLCPTVQLEDICNHQGLTPLKLAAKEGKIEIFRHILQREFSG
LYQPLSRKFTEWCYGPVRVSLYDLSSVDSWEKNSVLEIIAFHCKSPHRHR
MVVLEPLNKLLQEKWDRLIPRFFFNFACYLVYMIIFTIVAYHQPSTFGDS
MLLLGHILILLGGIYLLLGQLWYFWRRRLFIWISFMDSYFEILFLVQALL
TVLSQVLRFVETEWYLPLLVSSLVLGWLNLLYYTRGFQHTGIYSVMITKV
ILRDLLRFLLVYLVFLFGFAVALVSLSREARPVPYGGILDASLELFKFTI
GMGELAFQEQLRFRGVVLLLLLAYVLLTYVLLLNMLIALMSETVNSVATD
SWSIWKLQKAISVLEMENGYWWCRRKRHRAGRLLKVGTKGDGIPDERWCF
RVEEVNWAAWEKTL
Ligand information
Ligand IDCLR
InChIInChI=1S/C27H46O/c1-18(2)7-6-8-19(3)23-11-12-24-22-10-9-20-17-21(28)13-15-26(20,4)25(22)14-16-27(23,24)5/h9,18-19,21-25,28H,6-8,10-17H2,1-5H3/t19-,21+,22+,23-,24+,25+,26+,27-/m1/s1
InChIKeyHVYWMOMLDIMFJA-DPAQBDIFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0CC(C)CCCC(C)C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C
CACTVS 3.341CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@@H](O)CC[C@]4(C)[C@H]3CC[C@]12C
ACDLabs 10.04OC4CCC3(C(=CCC2C1C(C(C(C)CCCC(C)C)CC1)(C)CCC23)C4)C
OpenEye OEToolkits 1.5.0CC(C)CCC[C@@H](C)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC=C4[C@@]3(CC[C@@H](C4)O)C)C
CACTVS 3.341CC(C)CCC[CH](C)[CH]1CC[CH]2[CH]3CC=C4C[CH](O)CC[C]4(C)[CH]3CC[C]12C
FormulaC27 H46 O
NameCHOLESTEROL
ChEMBLCHEMBL112570
DrugBankDB04540
ZINCZINC000003875383
PDB chain7xer Chain B Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7xer Structural mechanisms of TRPV2 modulation by endogenous and exogenous ligands.
Resolution2.47 Å
Binding residue
(original residue number in PDB)		Y466 V501 L505
Binding residue
(residue number reindexed from 1)		Y389 V424 L428
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005216 monoatomic ion channel activity
GO:0005261 monoatomic cation channel activity
GO:0005262 calcium channel activity
Biological Process
GO:0006811 monoatomic ion transport
GO:0006915 apoptotic process
GO:0009266 response to temperature stimulus
GO:0045773 positive regulation of axon extension
GO:0055085 transmembrane transport
GO:0070588 calcium ion transmembrane transport
GO:0090280 positive regulation of calcium ion import
GO:0120162 positive regulation of cold-induced thermogenesis
Cellular Component
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0009986 cell surface
GO:0016020 membrane
GO:0030424 axon
GO:0032584 growth cone membrane
GO:0042470 melanosome
GO:0044295 axonal growth cone
GO:0044297 cell body

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7xer, PDBe:7xer, PDBj:7xer
PDBsum7xer
PubMed36163384
UniProtQ9WTR1|TRPV2_MOUSE Transient receptor potential cation channel subfamily V member 2 (Gene Name=Trpv2)

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