Structure of PDB 7wjo Chain B Binding Site BS01

Receptor Information
>7wjo Chain B (length=801) Species: 1094619 (Phytophthora sojae strain P6497) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PPPSIRSCGSQQYVTSYIPTGAAFPPSSVQDMISSMKSYASATDLVRTYS
EIPSVEEALSTLDRAAAALNARRYRDALKLYLEGGYAMANVAERQANPKI
CNLLTSKGFETLNWCARLCDWIEGRIKEKHPRPGVHKVGIPVSNWDEDWV
GPFMDEEEARRMWYTPVYCPHPIDFSNLGYRLRCVETGRRPRLMICITMY
NEGPQQLKATLKKLANNLAYLKEQMPGDEKSLTGAFAGDDVWQNVLVCIV
ADGREQVHPKTLDYLEAIGLYDEDLLTINSAGIGAQCHLFEHTLQLSVNG
KCLLPIQTVFALKENKASKLDSHHWYFNAFAEQIQPEYTAVMDVGTMLTK
SALYHLLFAFERNHQIGGACGQLTVDNPFENLSNWVISAQHFEYKISNIL
DKSLESCFGFISVLPGAFSAYRYEAIRGAPLDAYFQTLNIELDVLGPFIG
NMYLAEDRILSFEVVARKNCNWTMHYVKDAVARTDVPHDLVGLISQRKRW
LNGAFFATLFSIWNWGRIYSESKHTFVRKMAFLVFYVYHLLYTAFGFFLP
ANLYLALFFIVFQGFQQNRLEFIDTSEYSQTVLDCAVYIYNFSYLFGLLM
LIIIGLGNNPKHMKLTYYFVGAVFGLMMMLSSLVGAGIFFSTPATVHSIV
VSILTVGVYFIASALHGEVHHIFMTFTHYTALIPSFVNIFTIYSFCNLQD
LSKGDFKDVIAKRRALEELRREEKERVENRKKNFEAFRTNVLLTWAFSNL
IFALFVVYFASSSTYMPVLYIFVASLNTCRLLGSIGHWVYIHTEGLRGRV
I
Ligand information
Ligand IDBGI
InChIInChI=1S/C20H25N5O10/c1-7(13(28)9-3-2-8(26)6-22-9)11(21)17(31)24-12(19(32)33)16-14(29)15(30)18(35-16)25-5-4-10(27)23-20(25)34/h2-7,11-16,18,26,28-30H,21H2,1H3,(H,24,31)(H,32,33)(H,23,27,34)/t7-,11-,12-,13-,14-,15+,16+,18+/m0/s1
InChIKeyWWJFFVUVFNBJTN-VHDFTHOZSA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH]([CH](N)C(=O)N[CH]([CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O)C(O)=O)[CH](O)c3ccc(O)cn3
CACTVS 3.385C[C@@H]([C@H](N)C(=O)N[C@@H]([C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=O)C(O)=O)[C@H](O)c3ccc(O)cn3
ACDLabs 12.01Oc1ccc(nc1)C(O)C(C)C(N)C(=O)NC(C1OC(N2C=CC(=O)NC2=O)C(O)C1O)C(=O)O
OpenEye OEToolkits 2.0.7CC(C(c1ccc(cn1)O)O)C(C(=O)NC(C2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)C(=O)O)N
OpenEye OEToolkits 2.0.7C[C@H]([C@@H](c1ccc(cn1)O)O)[C@@H](C(=O)N[C@@H]([C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)C(=O)O)N
FormulaC20 H25 N5 O10
Name(2S)-{[(2S,3S,4S)-2-amino-4-hydroxy-4-(5-hydroxypyridin-2-yl)-3-methylbutanoyl]amino}[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxyoxolan-2-yl]acetic acid (non-preferred name);
Nikkomycin Z
ChEMBLCHEMBL35306
DrugBankDB12939
ZINCZINC000029246385
PDB chain7wjo Chain B Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7wjo Structural basis for directional chitin biosynthesis.
Resolution3.2 Å
Binding residue
(original residue number in PDB)
T237 M238 Y239 E241 D291 K358 D382 V383 L412 T523 W539
Binding residue
(residue number reindexed from 1)
T198 M199 Y200 E202 D252 K319 D343 V344 L373 T484 W500
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.16: chitin synthase.
Gene Ontology
Molecular Function
GO:0004100 chitin synthase activity
GO:0016757 glycosyltransferase activity
GO:0016758 hexosyltransferase activity
Biological Process
GO:0006031 chitin biosynthetic process
GO:0071555 cell wall organization
Cellular Component
GO:0005886 plasma membrane
GO:0030428 cell septum
GO:0071944 cell periphery

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7wjo, PDBe:7wjo, PDBj:7wjo
PDBsum7wjo
PubMed36131020
UniProtG4Z2L3

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