Structure of PDB 7w3s Chain B Binding Site BS01

Receptor Information
>7w3s Chain B (length=413) Species: 446 (Legionella pneumophila) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKAIPPKIWFETQLKGSGLDKKFQIDELIETQSSVRVFANKKYLPDTETI
NEALTKVTAVNVSGDKSGYFQNGLPFPNEAGYFEKIPVGHPELLSPIERL
TGSKKIVSSHSLVTASGGYPLTNPLLPYRKPIRVSIFSLAGPSFENNYLH
YRLFLLDSVQKIIDSPLFSHLHDGLPIQFDEAKKELGEYDTNKLMARIRL
GFPYLARFSSGGFYPSFSKSNAIIFLSEAYFRYQLEDVSLLLASVNQTGK
ETGKAALLKATAVGMGFFAKIDCGYDIQHIIFPYYLRAYKKLLSEHKFPW
IAKIEFPIFNEIQQEQFDSIFEDYDGPTKVYRSTRDVLEFREEEIEKYLP
AAINPSDAFALTGNEWGYGSVESMIGNNSSIRFDQVHHMNPLILDPSHHV
EAQINKDHGVELT
Ligand information
Ligand IDAR6
InChIInChI=1S/C15H23N5O14P2/c16-12-7-13(18-3-17-12)20(4-19-7)14-10(23)8(21)5(32-14)1-30-35(26,27)34-36(28,29)31-2-6-9(22)11(24)15(25)33-6/h3-6,8-11,14-15,21-25H,1-2H2,(H,26,27)(H,28,29)(H2,16,17,18)/t5-,6-,8-,9-,10-,11-,14-,15+/m1/s1
InChIKeySRNWOUGRCWSEMX-ZQSHOCFMSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)O)O)O)O)O)N
OpenEye OEToolkits 1.7.6c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@H](O4)O)O)O)O)O)N
ACDLabs 12.01O=P(OCC3OC(n1c2ncnc(N)c2nc1)C(O)C3O)(O)OP(=O)(O)OCC4OC(O)C(O)C4O
CACTVS 3.370Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O
CACTVS 3.370Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O
FormulaC15 H23 N5 O14 P2
Name[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE;
Adenosine-5-Diphosphoribose
ChEMBL
DrugBankDB02059
ZINCZINC000014880207
PDB chain7w3s Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7w3s Legionella pneumophila temporally regulates the activity of ADP/ATP translocases by reversible ADP-ribosylation.
Resolution2.324 Å
Binding residue
(original residue number in PDB)
P135 A277 G279 M280 G281 F282 F283 F324 D351 V352 P370 D372 N379 S385 V386 E387
Binding residue
(residue number reindexed from 1)
P120 A262 G264 M265 G266 F267 F268 F309 D336 V337 P355 D357 N364 S370 V371 E372
Annotation score4
External links