Structure of PDB 7vfq Chain B Binding Site BS01

Receptor Information
>7vfq Chain B (length=396) Species: 391904 (Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VVNITYMHRLPDSKGMTLVNDIVAKWNKEHPNIQVKATKFDGNASEMIKK
LETDVKAGNAPDLAQVGYAEVPEVFTKGLLQDVTDEAAKYKDDFASAPFA
LMQVDGKTYGLPQDTGPLAYFYNAAEFEKLGITVPKTADELIETAKKTAA
QGKYIMTFQPDEAMMMMSGQAGASGPWYKVDNSWVVNTQTKGSKAVADVY
QQLIDNKAALTNPRWDASFDNSIQSGQLIGTVAAAWEAPLFIDSAGGTGA
GEWKVTQLGDWFGNGTKTGSDGGSGVAVLKGSKHPAEAMEFLDWFNTQVD
DLVSQGLVVAATTADAKTPQKWSDYFSGQDVMAEFKTANDNMGDFTYMPG
FSAVGAAMKQTAAKAADGSAKVSDVFDTAQKTSVDTLKNLGLSVKE
Ligand information
Ligand IDBGC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-VFUOTHLCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-glucopyranose;
beta-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL1614854
DrugBankDB02379
ZINCZINC000003833800
PDB chain7vfq Chain F Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7vfq Short stretch sequence of a milk oligosaccharide transporter represents the phenotypic selection trajectory in infant gut microbiome
Resolution1.55 Å
Binding residue
(original residue number in PDB)		S86 M205 S394 A398 K401
Binding residue
(residue number reindexed from 1)		S45 M164 S352 A356 K359
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
GO:1901982 maltose binding
Biological Process
GO:0015768 maltose transport
GO:0042956 maltodextrin transmembrane transport
Cellular Component
GO:0055052 ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7vfq, PDBe:7vfq, PDBj:7vfq
PDBsum7vfq
PubMed
UniProtB7GN82

[Back to BioLiP]