Structure of PDB 7ufs Chain B Binding Site BS01

Receptor Information
>7ufs Chain B (length=1040) Species: 216816 (Bifidobacterium longum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SMFLLPNQQLERCDRVMQQRVKPHIHTTLAACTLRSFHNPGEPVPSSEFL
AKVRNGQVPFEPFRVPGVWGTTWGTTWFEVNGHIDMAAVKGRKVELMVDL
GWLDHRGPGFQSEGLVYRADGTAIKSANPRNHWIPLVYADGSSTVELDEH
GDFTVYIEAAANPFVEGPTPFSPTELGEEATGTCDFPYTLSRMDITIFNE
DVFAYDMDLETVSSLIRELKDDDPRYWQLAKALQRSLNIYDERDLETVPA
ARAALAGVLAEPAASSAINHIAIGHAHIDSAWLWPVRETRRKVARTVSNV
LALMDEDPDFTYAMSSAQQYAWLEEEHPDLFARMKRRIEEGRFIPVGGMW
VESDNMIPSGESLVRQITFGRRYFKEHLGVTPRGIWLPDSFGYAGSWPQI
ARRAGFDWFLTQKISWNDTTKFPHHSFMWEGIDGTRILTHFPPSDTYCSS
MSMRELMYSQRNFLDKDLSRNAILLYGFGDGGGGPTREMTARIRRDHDLA
GAPKIDFGTPDQLFDRVRKDIVDDARGETPVFHGELYLELHRGTLTAQQD
MKRGCRQEESMLRVVEYLCAVASIKNPGYVYPREELDRIWKTLLLNQFHD
ILPGSAIAWVHRQAREEYARDIAHLRDIAAAAGQAVKEAEPGIATVKHAV
IAPYASNPQYSWAVRDGGVIPVSVERGGNAIILDNGRLRVRIEADGTVSS
LIDLALRRELVPSGVRMGRYELLKDEPFHWDAWDIQRDAFLAADTLTDAM
VEHVEDMPDGSAAIHVVTRARGVEIHTVITLRPGSGSLDFTADVNWHAVE
KFLKVDMPVTVQAVNAQYECQYGLVERPINKNTRSDDAKFESCTHRFVRI
ADADYAAAVVNASTYGSDVSPIHAAAAHGAGRGTMVRLSLLSAPLYPDPR
TDQGEHFFAWSLVAGAGMESVLAEASRLNAPIMGELPAVRPLATLTDVAG
TPVLDWVKLADDGSGDLIVRLYEAAGGDAKATLRLDDTFAGCTVEEVNLM
EEPVLADDLPRALVAGGPVPAEGASVSFTPFQIVTLRIRR
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain7ufs Chain B Residue 1101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7ufs Cryo-EM Structure of Bl_Man38B at 3.4 A
Resolution3.4 Å
Binding residue
(original residue number in PDB)		H276 D278 D388 H598
Binding residue
(residue number reindexed from 1)		H277 D279 D389 H599
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004559 alpha-mannosidase activity
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0030246 carbohydrate binding
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0006013 mannose metabolic process
GO:0009313 oligosaccharide catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7ufs, PDBe:7ufs, PDBj:7ufs
PDBsum7ufs
PubMed
UniProtQ8G4Q0

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