Structure of PDB 7to3 Chain B Binding Site BS01

Receptor Information
>7to3 Chain B (length=568) Species: 550 (Enterobacter cloacae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QVPAELQAALTLINNDPRMRTNNAWALSADKRWSLKFTAELSVPCSSFMP
DNSVWHLVLWQEETLIRIEVYPDKSEGISATFQHQNYNFSDASTREWTSG
NPALENTPTVFGRNLWGLEPEALLDRISWRLSRLLLWIDAAAQEKLATTG
DAVELPAFPDQSPFTVIGFSEQIDDLPFWASKTGEWGFASSTGLPGAHGT
LFLREFLDNKGKLIRTTKWSPFMRKGARTTNAVWSVLPTLPVLAPWQAPR
TWQELSHCFAQCGLSLPDLFSDIGRSVRALRKQRAPGLLLLGFPLENKIG
DEPARIHWLALRLQPLSQEPIRWVRTQNWAADQLRTRGEAANDIRSKKVL
IIGAGSLGSMIAENLMRIGVVSQGILDADLLQTGNLSRHALTMTSVGHNK
AAALVEHLNRILPDASARSFSCAFPPESEVAKNSLRQYDVIIDCTGDDGV
LKSLAAFDWKSEKIFISLAMTWRAEGLFAFAASETSFPVTDASSRFNASA
SPEIDMDEARIEGIGAWHPVFPARADDVQLWAAVGTKFICRVVSAPGRIY
EYFKQMPDGTVEKEPHEY
Ligand information
Ligand IDAMP
InChIInChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKeyUDMBCSSLTHHNCD-KQYNXXCUSA-N
SMILES
SoftwareSMILES
CACTVS 3.370Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O
CACTVS 3.370Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.7.6c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N
ACDLabs 12.01O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
OpenEye OEToolkits 1.7.6c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)N
FormulaC10 H14 N5 O7 P
NameADENOSINE MONOPHOSPHATE
ChEMBLCHEMBL752
DrugBankDB00131
ZINCZINC000003860156
PDB chain7to3 Chain D Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7to3 An E1-E2 fusion protein primes antiviral immune signalling in bacteria.
Resolution2.74 Å
Binding residue
(original residue number in PDB)		G385 A386 G387 D409 D411 T477 V482
Binding residue
(residue number reindexed from 1)		G353 A354 G355 D377 D379 T445 V450
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 03:00:11 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7to3', asym_id = 'B', bs = 'BS01', title = 'An E1-E2 fusion protein primes antiviral immune signalling in bacteria.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7to3', asym_id='B', bs='BS01', title='An E1-E2 fusion protein primes antiviral immune signalling in bacteria.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0008641', uniprot = '', pdbid = '7to3', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008641', uniprot='', pdbid='7to3', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>