Structure of PDB 7o6z Chain B Binding Site BS01

Receptor Information
>7o6z Chain B (length=588) Species: 2730359 (Methylacidimicrobium sp. AP8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NDDVLKLTENPKNWAAPGKDYANTRHSPLKQINTQNVKGLHMAWSFSTGV
LRGHEGQPLVIGDRMYVVTPYPNIVWALDISKGNSYEVLWKYAPRQDDKA
VSTACCDTVNRGASYADGKIVFNTLDGYVVCLDANTGKELWKTKFADVNK
GETSTPAPIIVKDKVVTGYGGDEFGARGRFAAFDLNSGKMVWQAYSNGPD
SDVLLGPDFNSKHPEYGQAGQDLGVKTYPDEEWKRGGGCAWGWYSYDPKL
DLIYYNTGNPGLWSPSYRTEAKTHEEANEPWKWDNKWSMTIFARKPDTGE
AVWGYQMTPFDQWDYDGINEDVLVDITVDGSKKPCLVHFDRNGFCYVLNR
TDGTIIRANKFVTVNWAEKIDMKTGRPVKVKEHSPFEVGKAVQAYPSAMG
GKDQQPVAVDPKEPNVFYAPTNNWGMTLEPMERAHTNQGSVYVFANVLMK
PEKPGVMGRFKAFDVITGKARWDIPERFPTWSGALVTDGGLAFYGTLDGW
FKAVDRKTGKVLWQQKLGSGIIGNPISYEVGGKQYISVLSGIGGWIGLPV
TAGLDPADPYGALGVSGMAAENGFYNIPMGGTLYTFCV
Ligand information
Ligand IDPQQ
InChIInChI=1S/C14H6N2O8/c17-10-4-2-6(14(23)24)15-8(4)7-3(12(19)20)1-5(13(21)22)16-9(7)11(10)18/h1-2,15H,(H,19,20)(H,21,22)(H,23,24)
InChIKeyMMXZSJMASHPLLR-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0c1c2c([nH]c1C(=O)O)-c3c(cc(nc3C(=O)C2=O)C(=O)O)C(=O)O
CACTVS 3.341OC(=O)c1[nH]c2c(c1)C(=O)C(=O)c3nc(cc(C(O)=O)c23)C(O)=O
ACDLabs 10.04O=C(O)c1c3c(nc(C(=O)O)c1)C(=O)C(=O)c2cc(C(=O)O)nc23
FormulaC14 H6 N2 O8
NamePYRROLOQUINOLINE QUINONE
ChEMBLCHEMBL1235421
DrugBankDB03205
ZINCZINC000001532545
PDB chain7o6z Chain B Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7o6z Neodymium as Metal Cofactor for Biological Methanol Oxidation: Structure and Kinetics of an XoxF1-Type Methanol Dehydrogenase.
Resolution2.3 Å
Binding residue
(original residue number in PDB)		E86 C136 C137 R142 T186 G201 G202 D203 E204 W272 D347 R372 D434 W512 G575 W576
Binding residue
(residue number reindexed from 1)		E55 C105 C106 R111 T155 G170 G171 D172 E173 W241 D316 R341 D403 W481 G544 W545
Annotation score1
Enzymatic activity
Enzyme Commision number 1.1.2.7: methanol dehydrogenase (cytochrome c).
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
Cellular Component
GO:0016020 membrane

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Molecular Function
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Cellular Component
External links
PDB RCSB:7o6z, PDBe:7o6z, PDBj:7o6z
PDBsum7o6z
PubMed34544276
UniProtA0A7R8L7W4

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