Structure of PDB 7my6 Chain B Binding Site BS01

Receptor Information

>7my6 Chain B (length=286) Species: 1140 (Synechococcus elongatus PCC 7942 = FACHB-805)

VASSSLRFDLKSYLKERQRQVEAALNAILPPQDPPLIYESMRYSLLAEGK
RLRPILCLASCELAGGTAAIALPTACALEMVHTMSLIHDDLPSMDNDDFR
RGRPTNHKVYGEDIAILAGDALLTYAFEAIARHTPEVPADRVLKVIAALA
RAVGAEGLVGGQVVDLQSEGRDDVNLETLHYIHTHKTGALLEVSVVSGAI
LAGASEELQEQLRTYAQKIGLAFQVIDDILDITAKATYPSLLGLDASREY
ADQLITEAKAAIAAFGAEADPLRAIADYITARKHLL

Ligand information

• Ligand ID: MG
• InChI: InChI=1S/Mg/q+2
• InChIKey: JLVVSXFLKOJNIY-UHFFFAOYSA-N
• SMILES:
  ACDLabs 10.04
  OpenEye OEToolkits 1.5.0: [Mg+2]
  CACTVS 3.341: [Mg++]
• Formula: Mg
• Name: MAGNESIUM ION
• DrugBank: DB01378
• PDB chain: 7my6 Chain B Residue 407

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7my6 Molecular characterization of cyanobacterial short-chain prenyltransferases and discovery of a novel GGPP phosphatase.
• Resolution: 2.02 Å
• Binding residue (original residue number in PDB): D90 D96
• Binding residue (residue number reindexed from 1): D89 D95
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 2.5.1.10: (2E,6E)-farnesyl diphosphate synthase.

Gene Ontology

Molecular Function

• GO:0004337 geranyltranstransferase activity
• GO:0004659 prenyltransferase activity
• GO:0016740 transferase activity
• GO:0046872 metal ion binding

Biological Process

• GO:0008299 isoprenoid biosynthetic process

Cellular Component

• GO:0005737 cytoplasm

External links

• PDB: RCSB:7my6, PDBe:7my6, PDBj:7my6
• PDBsum: 7my6
• PubMed: 35704353
• UniProt: Q31Q61