Structure of PDB 7lr8 Chain B Binding Site BS01

Receptor Information

>7lr8 Chain B (length=415) Species: 1003195 (Streptantibioticus cattleyicolor NRRL 8057 = DSM 46488)

RSPRFGVNYTPSNGWFHHWLDFDLDAVRADLDSVAALGFDHVRVFPLWPV
FQPNRTLIRPRAVEQLAALTDAAGERGLDVNVDGLQGHLSSFDFLPAWTT
TWHRRNLFTDPDVVSGQAEYLRTLAAALADRPNFLGMTVGNAINQFSGHP
HPDPDRVTPEQAGDWLRRMLDACERGAPGRLHLHAEYDAAWYLDDHPFTP
AHSARIGAVTAVHSWVFNGTAQRYGTRSTATAQHAAYLVELAKAWAREPR
RPVWLQEVGAPAPHVPAEYAAEFATATIDAVLDCPEVWGVTWWCSHDVDR
RLADFPELEYSLGLLTQDRRVKPAGRAVAEAVRRWRTETPAPRPRTTALV
VDVGPGDQAPARSVCAPGGAVFEAFMRLTAQGARPTTVLAEHATDADHLA
ARGITEVVTPHDVHL

Ligand information

• Ligand ID: BMA
• InChI: InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6-/m1/s1
• InChIKey: WQZGKKKJIJFFOK-RWOPYEJCSA-N
• SMILES:
  CACTVS 3.341: OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(C(O1)O)O)O)O)O
  CACTVS 3.341: OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
  OpenEye OEToolkits 1.5.0: C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)O
  ACDLabs 10.04: OC1C(O)C(OC(O)C1O)CO
• Formula: C6 H12 O6
• Name: beta-D-mannopyranose;
  beta-D-mannose;
  D-mannose;
  mannose
• ZINC: ZINC000003830679
• PDB chain: 7lr8 Chain C Residue 2

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7lr8 N-Glycan Degradation Pathways in Gut- and Soil-Dwelling Actinobacteria Share Common Core Genes.
• Resolution: 1.6 Å
• Binding residue (original residue number in PDB): S101 N152 W226 F228 E268 W304 E320
• Binding residue (residue number reindexed from 1): S90 N141 W215 F217 E257 W293 E309
• Annotation score: 4

External links

• PDB: RCSB:7lr8, PDBe:7lr8, PDBj:7lr8
• PDBsum: 7lr8
• PubMed: 33764747
• UniProt: F8JJ04