Structure of PDB 7lmw Chain B Binding Site BS01

Receptor Information
>7lmw Chain B (length=208) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAMAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGG
GPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQ
IPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEK
GVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPHRALRTA
PIQPRVWE
Ligand information
Ligand IDY6P
InChIInChI=1S/C13H11N3O2/c1-7-3-2-4-9-10(8-5-14-15-6-8)12(13(17)18)16-11(7)9/h2-6,16H,1H3,(H,14,15)(H,17,18)
InChIKeyGUEVKZFKUSZADK-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7Cc1cccc2c1[nH]c(c2c3c[nH]nc3)C(=O)O
CACTVS 3.385Cc1cccc2c1[nH]c(C(O)=O)c2c3c[nH]nc3
FormulaC13 H11 N3 O2
Name7-methyl-3-(1~{H}-pyrazol-4-yl)-1~{H}-indole-2-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain7lmw Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7lmw A fragment-based approach to discovery of Receptor for Advanced Glycation End products inhibitors.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		R98 Q100 K110 S111 N112
Binding residue
(residue number reindexed from 1)		R79 Q81 K91 S92 N93
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:7lmw, PDBe:7lmw, PDBj:7lmw
PDBsum7lmw
PubMed34156100
UniProtQ15109|RAGE_HUMAN Advanced glycosylation end product-specific receptor (Gene Name=AGER)

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