Structure of PDB 7la8 Chain B Binding Site BS01

Receptor Information
>7la8 Chain B (length=172) Species: 7757 (Petromyzon marinus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SCPSQCSCSGTDVNCDGARFASVPAAIPITTQRLWLSNNQLTKLDPGVFD
SLTQLTTLYLSNNQLTALPAGVFDKLTQLKELGLDQNQLKSIPDGAFARL
PSLTHVWLHTNPWDCQCTDILYLSGWVAQHSSIVGEGWLRSWTVNPDNAK
CSGTNTPVRAVTEASTSPSKCP
Ligand information
Ligand IDSGA
InChIInChI=1S/C6H12O9S/c7-1-2-3(8)5(15-16(11,12)13)4(9)6(10)14-2/h2-10H,1H2,(H,11,12,13)/t2-,3+,4-,5+,6-/m1/s1
InChIKeyHHRMGTRTCHNCRO-FDROIEKHSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=S(=O)(OC1C(O)C(OC(O)C1O)CO)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O[S](O)(=O)=O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O[S](O)(=O)=O)[C@H]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)OS(=O)(=O)O)O)O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)O)O)OS(=O)(=O)O)O)O
FormulaC6 H12 O9 S
Name3-O-sulfo-beta-D-galactopyranose;
O3-SULFONYLGALACTOSE;
3-O-sulfo-beta-D-galactose;
3-O-sulfo-D-galactose;
3-O-sulfo-galactose
ChEMBL
DrugBankDB01818
ZINCZINC000005829868
PDB chain7la8 Chain D Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7la8 Novel lamprey antibody recognizes terminal sulfated galactose epitopes on mammalian glycoproteins.
Resolution1.8965 Å
Binding residue
(original residue number in PDB)		Y59 S61 D85 Q86 W107 H109 G137
Binding residue
(residue number reindexed from 1)		Y59 S61 D85 Q86 W107 H109 G137
Annotation score1
External links