Structure of PDB 7kmq Chain B Binding Site BS01

Receptor Information
>7kmq Chain B (length=754) Species: 190486 (Xanthomonas citri pv. citri str. 306) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LPPVAAAEALQLWYREPANEWVEALPVGNGRLGAMVWGGIAHERLQLNED
TLYAGGPYDSTSPDALAALPQVRALIFAGRYAEAEKLADAKLLSRPLKQM
PYQPLGDLLLDFDRADGISDYRRQLDLDTAVATTTFRSGGAVHRREVFVC
AQAQCIVVRLSCDRPGGISLRVGIDSPQTGEVTAEPGGLLFSGRNGSFAG
IEGRLRFALRVLPQVSGGKLSQVRDRLRIDAADEVVLLLSAATSYQRFDA
VDGDPLALTAARLRKAAKLDFPALLRAHLADHQRLFRRVAIDLGSSEAVQ
LPTDERVQRFAEGNDPALAALYHQYGRYLLICSSRPGTQPANLQGIWNDL
MQPPWESKYTININTEMNYWPSEANALHECVEPLEAMLFDLAQTGTHTAR
AIYDAPGWVVHNNTDLWRQAGPIDGAQWSLWPMGGVWLLQQLWDRWDYGR
DRAYLSKVYPLFKGAAEFFVATLMRDPQTGAMVTNPSMSPENQHPFGAAV
CAGPSMDAQLLRDLFAQCIAMSKLLGIDAQLAQQLAALREQLPPNRIGKA
GQLQEWQQDWDMQAPEINHRHVSHLYALHPSSQINLRDTPELAAAARRSL
EIRGDNATGWGIGWRLNLWARLADGEHAYRILQLLISPERTYPNLFDAHP
PFQIDGNFGGTAGITEMLLQSWGGSVFLLPALPKAWPRGSVRGLRVRGGA
SVDLEWEGGRLQQARLHSDRGGRYQLSYAGQTLDLELGAGRTQQVGLNNN
RLVT
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain7kmq Chain B Residue 804 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7kmq Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors
Resolution2.045 Å
Binding residue
(original residue number in PDB)		G65 D85 S368 T373 Q374
Binding residue
(residue number reindexed from 1)		G30 D50 S333 T338 Q339
Annotation score1
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Thu Nov 28 11:38:10 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7kmq', asym_id = 'B', bs = 'BS01', title = 'Xyloglucan processing machinery in Xanthomonas p...e transcriptional activation of virulence factors'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7kmq', asym_id='B', bs='BS01', title='Xyloglucan processing machinery in Xanthomonas p...e transcriptional activation of virulence factors')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0004560,0005975', uniprot = '', pdbid = '7kmq', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004560,0005975', uniprot='', pdbid='7kmq', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>