Structure of PDB 7kh2 Chain B Binding Site BS01

Receptor Information
>7kh2 Chain B (length=409) Species: 264 (Francisella tularensis subsp. novicida) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SKLSDSKSVFSKLSNKQIETIIQRYASPCFIIDENALLERARLFQQAILN
QYQNSIAAYSVKTQSLNTIIQKFYEVGFIPEVVSSDEFEQIQKLQLCDKS
IIFNGPYKNDASLIKALQLNAMINCDHFDEILRIAKIAKKLNITAKIGLR
IADNKTPQNWSRFGFALTIFTTIDKIQQIANIQLAGLHCHIGTNIRDISR
FTAMAKNIAELAETILTKYKLTLEWIDLGGGLAGISPTLSDKRLQPYNPF
DLELYAATIIAPLKEYLNKTNDKTKLIFELGRSLVDYSVALLTTIVGTRE
QNEDFQSLITDAGIHTIPTISTYRHPIYHLKTDSYHKKTLLLGPSCMQHD
FLHDDIFLPKLEYGDKLLIDGVGAYNISRNNEFIHLKPSVILIDKNQQYQ
VLRVRQTHQ
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain7kh2 Chain B Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7kh2 Alternative pathways utilize or circumvent putrescine for biosynthesis of putrescine-containing rhizoferrin.
Resolution2.05 Å
Binding residue
(original residue number in PDB)		S61 K63 E82 H198 G239C E287 G289 R290 Y383
Binding residue
(residue number reindexed from 1)		S60 K62 E81 H190 G231 E279 G281 R282 Y375
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0008836 diaminopimelate decarboxylase activity
GO:0016830 carbon-carbon lyase activity
Biological Process
GO:0009089 lysine biosynthetic process via diaminopimelate

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Molecular Function
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Biological Process
External links
PDB RCSB:7kh2, PDBe:7kh2, PDBj:7kh2
PDBsum7kh2
PubMed33277357
UniProtQ15EG8

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