Structure of PDB 7fjj Chain B Binding Site BS01

Receptor Information
>7fjj Chain B (length=1095) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VEEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDADPM
WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRG
SQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVK
GVEKVILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSRTNMAVKQGR
FYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGTEEHVMAAFGPSLEEC
QKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEARELLASTILTHVP
VKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLL
FEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTG
NWSLKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQ
PSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVED
VNLLCGEELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFV
SISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFE
DFLHESLVEYLDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLI
PYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKT
KTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVY
KNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKVE
NKQVLVNKSMPTQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQ
TRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSR
MTVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKD
YVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTE
GRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLG
YSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRLKLSKYN
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7fjj Structural insights into RNA polymerase III-mediated transcription termination through trapping poly-deoxythymidine.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		Q438 Q692 K896 H1014
Binding residue
(residue number reindexed from 1)		Q416 Q670 K859 H977
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0001056 RNA polymerase III activity
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0032549 ribonucleoside binding
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
GO:0071667 DNA/RNA hybrid binding
Biological Process
GO:0006351 DNA-templated transcription
GO:0032728 positive regulation of interferon-beta production
GO:0042796 snRNA transcription by RNA polymerase III
GO:0045087 innate immune response
GO:0045089 positive regulation of innate immune response
GO:0051607 defense response to virus
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005666 RNA polymerase III complex
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7fjj, PDBe:7fjj, PDBj:7fjj
PDBsum7fjj
PubMed34675218
UniProtQ9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 (Gene Name=POLR3B)

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