Structure of PDB 7f9v Chain B Binding Site BS01

Receptor Information
>7f9v Chain B (length=476) Species: 5811 (Toxoplasma gondii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TAKKDENFSEWYTQAIVRSEMIEYYDISGCYIMRPWAFHIWEKVQRFFDD
EIKKMGVENSYFPMFVSRHKLEEVAWVTHYGDSPLPEKIAIRPTSETIMY
PAYAKWIRSHRDLPLKLNQWCSVVRWEFKQPTPFLRTREFLWQEGHTAHA
TEEEAWELVLDILELYRRWYEECLAVPVIKGEKSEGEKFAGGKKTTTVEA
FIPENGRGIQAATSHLLGTNFAKMFEIEFEDEEGHKRLVHQTSWGCTTRS
LGVMIMTHGDDKGLVIPPRVASVQVVIIPILFKDENTGEILGKCRELKTM
LEKADIRVRIDDRSNYTPGWKYNHWEVKGVPLRLELGPKDLAKGTARVVR
RDTGEAYQISWADLAPKLLELMEGIQRSLFEKAKARLHEGIEKISTFDEV
MPALNRKHLVLAPWCEDPESEEQIKKETQKLSEIQAIEGAMKTLCIPFDQ
PPMPEGTKCFYTGKPAKRWTLWGRSY
Ligand information
Ligand ID1TI
InChIInChI=1S/C27H27FN6O2/c1-17-8-22(34-7-6-27(16-29,25(34)36)26(2)4-5-26)12-23(32-17)24(35)30-13-18-9-19(11-21(28)10-18)20-14-31-33(3)15-20/h8-12,14-15H,4-7,13H2,1-3H3,(H,30,35)/t27-/m0/s1
InChIKeyPFICVJYRZDMEIX-MHZLTWQESA-N
SMILES
SoftwareSMILES
CACTVS 3.385Cn1cc(cn1)c2cc(F)cc(CNC(=O)c3cc(cc(C)n3)N4CC[C@](C#N)(C4=O)C5(C)CC5)c2
CACTVS 3.385Cn1cc(cn1)c2cc(F)cc(CNC(=O)c3cc(cc(C)n3)N4CC[C](C#N)(C4=O)C5(C)CC5)c2
OpenEye OEToolkits 2.0.7Cc1cc(cc(n1)C(=O)NCc2cc(cc(c2)F)c3cnn(c3)C)N4CC[C@@](C4=O)(C#N)C5(CC5)C
OpenEye OEToolkits 2.0.7Cc1cc(cc(n1)C(=O)NCc2cc(cc(c2)F)c3cnn(c3)C)N4CCC(C4=O)(C#N)C5(CC5)C
FormulaC27 H27 F N6 O2
Name4-[(3S)-3-cyano-3-(1-methylcyclopropyl)-2-oxidanylidene-pyrrolidin-1-yl]-N-[[3-fluoranyl-5-(1-methylpyrazol-4-yl)phenyl]methyl]-6-methyl-pyridine-2-carboxamide
ChEMBL
DrugBank
ZINC
PDB chain7f9v Chain B Residue 902 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7f9v TgPRS with double inhibitors
Resolution1.816 Å
Binding residue
(original residue number in PDB)
R470 E472 K474 Q475 P476 L480 R481 T482 F485 Q555 A557 G590 T592 R594
Binding residue
(residue number reindexed from 1)
R125 E127 K129 Q130 P131 L135 R136 T137 F140 Q210 A212 G245 T247 R249
Annotation score1
Enzymatic activity
Enzyme Commision number 6.1.1.15: proline--tRNA ligase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0004812 aminoacyl-tRNA ligase activity
GO:0004827 proline-tRNA ligase activity
GO:0005524 ATP binding
Biological Process
GO:0006418 tRNA aminoacylation for protein translation
GO:0006433 prolyl-tRNA aminoacylation
Cellular Component
GO:0005737 cytoplasm

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7f9v, PDBe:7f9v, PDBj:7f9v
PDBsum7f9v
PubMed
UniProtA0A7J6JUK2

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