Structure of PDB 7f1a Chain B Binding Site BS01

Receptor Information
>7f1a Chain B (length=423) Species: 1841599 (Candidatus Odinarchaeum yellowstonii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MPGREILVLHVGQGGNQIGYNFWKTICEEHNIDIRSNQRKSVEEDKVDYK
SVFLVEAPDGFHPRALFIDLEPLAVEFLVKEMKLGSFFSEDLMVLSYSGA
HNVWSIGYQTGKKLIPVILEKIRDTMPETLQGFLIIHTLGGGTGSGFGSL
LTETLKKEFPGKGVLNFSVLPSEVNDVTLAPYNTVLSLNHLSRFSDLVVL
FDNTALIRIVKDQLNYPVIKQFSDLNFLIGRVMASITASLRFPGPLNMDL
MEMAHNLVALPETKFIIPSVAPLTKEESEMSTELDLVERCFDPTHYMVNC
SGQGKTISSVLMFRGNIAIENAFSIMTDIKSNVAFAPGVHPDLGLKYGIC
ESAPVDFDKEVTLLSNNTIISEVFNRVLERFDSLFNRDWYTSDYVNAGTS
KSNLKEARDNFDRIIKIYKEIEG
Ligand information
Ligand IDGTP
InChIInChI=1S/C10H16N5O14P3/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1
InChIKeyXKMLYUALXHKNFT-UUOKFMHZSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
CACTVS 3.370NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
CACTVS 3.370NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
OpenEye OEToolkits 1.7.6c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
ACDLabs 12.01O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O
FormulaC10 H16 N5 O14 P3
NameGUANOSINE-5'-TRIPHOSPHATE
ChEMBLCHEMBL1233147
DrugBankDB04137
ZINCZINC000060094177
PDB chain7f1a Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7f1a Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution.
Resolution1.9 Å
Binding residue
(original residue number in PDB)
G12 Q13 G14 Q17 A100 N102 T138 G141 G142 T143 G144 D176 N203 F222 N226
Binding residue
(residue number reindexed from 1)
G12 Q13 G14 Q17 A100 N102 T138 G141 G142 T143 G144 D176 N203 F222 N226
Annotation score4
Gene Ontology
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UnboundLocalError
Python 3.6.8: /usr/bin/python3
Thu Apr 17 17:00:04 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '7f1a', asym_id = 'B', bs = 'BS01', title = 'Structure and dynamics of Odinarchaeota tubulin ...mplications for eukaryotic microtubule evolution.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='7f1a', asym_id='B', bs='BS01', title='Structure and dynamics of Odinarchaeota tubulin ...mplications for eukaryotic microtubule evolution.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003924,0005200,0005525,0005874,0007017', uniprot = '', pdbid = '7f1a', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003924,0005200,0005525,0005874,0007017', uniprot='', pdbid='7f1a', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>