Structure of PDB 7dt1 Chain B Binding Site BS01

Receptor Information
>7dt1 Chain B (length=845) Species: 1613 (Limosilactobacillus fermentum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AGPWENMAYSMDSNSINNIDGYISYTGWYRPYGTSQDGKTWYPTTVADWR
PILMYVWPSKDVQVKFIQYFVNHGYENSNYGLTAGSVKDLSENTASIKLN
EVAQNLRYVIEQHVVAAKSTSQLANDINNFITTIPELSKASELSVVNSYG
YKPDNSGSVDDDQVIFVNNDSKNQKIGNTSYADSNYRLMNRTINNQNGDN
NSDDSPELLVGNDIDNSNPVVQAENLNWEYFLLNYGKFMNYNPNGNFDGF
RIDAADNIDADVLDQAAQLINSIYNTKGNQANANDHLIYNEGYHLGAANM
LDRKSNPELYMDSGYFYTLENVLGRASDRDDINNLITNSIVNRQNDVSEN
VATPNWSFVTNHDQRKNLINQIVIDDHPGVADIMSDGYKAEYVNQAWKEF
YADQARTDKKYTQYNLPAQYALLLTNKDTVPQVYYGDLYDETDQYMQNKS
VYYDAITTLMKARKSYVSGGQSMIKINDHLLTSVRYGKGIIDGNVSMTDI
LGRNSGIAVVVGNDAQMANQTISINMGKAHANQAYKQLLGTIDSGLTSSD
TTIYHTDSNGVLNVTVKGYSNPYVSGYLGVWVPLNGGANITTKASEVTNQ
SDKTYSSNAALDSHVIYEDFSLFQPEPTSKAEHAYNIIADNASLFNELGI
TDFWMAPAYTPFNTSRYNEGYSMTDRYNLGTEANLTKYGSGEELSNAIAA
LHDAGLKVQEDLVMNQMIGFSGQEAVTVTRTDGHAKQLTVDGKTFANQIY
FAYTRGGGEGQKNYGGKYLDELQKKYPELFTTKAVSTGVAPDPSVHITEW
SAKYQNGTSLQNIGIGLAVKLANGDYAYLNDSNNKAFNTTLPETM
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain7dt1 Chain B Residue 1101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7dt1 Characterization of a new 4,6-alpha-glucanotransferase from Limosilactobacillus fermentum NCC 3057 with ability of synthesizing low molecular mass isomalto-/maltopolysaccharide
Resolution2.43002 Å
Binding residue
(original residue number in PDB)		E397 D403 N447 N905
Binding residue
(residue number reindexed from 1)		E207 D213 N257 N715
Annotation score1
Enzymatic activity
Enzyme Commision number 2.4.1.5: dextransucrase.
Gene Ontology
Molecular Function
GO:0016757 glycosyltransferase activity
GO:0046527 glucosyltransferase activity
GO:0046872 metal ion binding
GO:0047849 dextransucrase activity
Biological Process
GO:0009250 glucan biosynthetic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7dt1, PDBe:7dt1, PDBj:7dt1
PDBsum7dt1
PubMed
UniProtA0A1Z2RUD1

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