Structure of PDB 7dog Chain B Binding Site BS01

Receptor Information
>7dog Chain B (length=319) Species: 158878 (Staphylococcus aureus subsp. aureus Mu50) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKIIHTADWHLGKILNGKQLLEDQAYILDMFVEKMKEEEPDIIVIAGDLY
DTTYPSKDAIMLLEQAIGKLNLELRIPIIMISGNHDGKERLNYGASWFEH
NQLFIRTDFTSINSPIEINGVNFYTLPYATVSEMKHYFEDDTIETHQQGI
TRCIETIAPEIDEDAVNILISHLTVQGGKTSDSERPLTIGTVESVQKGVF
DIFDYVMLGHLHHPFSIEDDKIKYSGSLLQYSFSEAGQAKGYRRLTINDG
IINDVFIPLKPLRQLEIISGEYNDVINEKVHVKNKDNYLHFKLKNMSHIT
DPMMSLKQIYPNTLALTNE
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain7dog Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7dog Crystal structure of the nuclease and capping domain of SbcD from Staphylococcus aureus.
Resolution2.91 Å
Binding residue
(original residue number in PDB)		D8 H10 D48 H210 H212
Binding residue
(residue number reindexed from 1)		D8 H10 D48 H210 H212
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0008408 3'-5' exonuclease activity
GO:0016787 hydrolase activity
Biological Process
GO:0006259 DNA metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:7dog, PDBe:7dog, PDBj:7dog
PDBsum7dog
PubMed33877576
UniProtQ99UD1|SBCD_STAAM Nuclease SbcCD subunit D (Gene Name=sbcD)

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