Structure of PDB 7dkg Chain B Binding Site BS01

Receptor Information
>7dkg Chain B (length=409) Species: 100837 (Influenza A virus (A/Chicken/Hong Kong/786/97 (H5N1))) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NATEIRASVGRMVGGIGRFYIQMCTELKLSDQEGRLIQNSITIERMVLSA
FDERRNAGKDPKKTGGPIYRRRDGKWVRELILYDKEEIRRIWRQANNGED
ATAGLTHMMIWHSNLNDATYQRTRALVRTGMDPRMCSLMQGSTLPRRSGA
AGAAIKGVGTMVMELIRMIKRGINRNFWRTRIAYERMCNILKGKFQTAAQ
KAMMDQVRESRNPGNAEIEDLIFLARSALILRGSIAHKSCLPACVYGLAV
ASGYDFEREGYSLVGIDPFRLLQNSQVFSLIRPNENPAHKSQLVWMACHS
AAFEDLRVSSFIRGTRVIPRGQLSTRGVQIASNENVEAMDSSTLELRSRY
WAIRTSDMRTEIIRMMESARPQGRGVFELSDEKATNPIVPSFDMSNEGSY
FFGDNAEEY
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7dkg Crystal structures of influenza nucleoprotein complexed with nucleic acid provide insights into the mechanism of RNA interaction.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		R65 S69 R75 K87 T92 G93 G94 L108 L110 S367
Binding residue
(residue number reindexed from 1)		R45 S49 R55 K59 T64 G65 G66 L80 L82 S332
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005198 structural molecule activity
Biological Process
GO:0046718 symbiont entry into host cell
GO:0075732 viral penetration into host nucleus
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0042025 host cell nucleus
GO:0043657 host cell
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7dkg, PDBe:7dkg, PDBj:7dkg
PDBsum7dkg
PubMed33784403
UniProtQ9PX50

[Back to BioLiP]