Structure of PDB 7dg0 Chain B Binding Site BS01
Receptor Information
>7dg0 Chain B (length=155) Species:
1188239
(Mesomycoplasma ovipneumoniae 14811) [
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SFVDLGISTQRKIVYELYFAVKYLSKNKVGAIITLQRNILLDSLRTDGVK
IDSLINSSLLIAIFQKSSPLHDGAVIIVDDRILYASTYFSVSESTLEDRY
GARHRAALGISEVSDSITVVVSEQSGEVVIVRDANFFKVTNLETFTEVLT
KELNS
Ligand information
Ligand ID
ADP
InChI
InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChIKey
XTWYTFMLZFPYCI-KQYNXXCUSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)O)N
CACTVS 3.341
Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O
ACDLabs 10.04
O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O
CACTVS 3.341
Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O
OpenEye OEToolkits 1.5.0
c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N
Formula
C10 H15 N5 O10 P2
Name
ADENOSINE-5'-DIPHOSPHATE
ChEMBL
CHEMBL14830
DrugBank
DB16833
ZINC
ZINC000012360703
PDB chain
7dg0 Chain B Residue 301 [
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Receptor-Ligand Complex Structure
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PDB
7dg0
Structure and function of Diadenylate cyclase DacM in Mycoplasma ovipneumoniae
Resolution
1.895 Å
Binding residue
(original residue number in PDB)
D112 G113 Y128 F129 A142 R143 A146
Binding residue
(residue number reindexed from 1)
D72 G73 Y88 F89 A102 R103 A106
Annotation score
4
Enzymatic activity
Enzyme Commision number
2.7.7.85
: diadenylate cyclase.
External links
PDB
RCSB:7dg0
,
PDBe:7dg0
,
PDBj:7dg0
PDBsum
7dg0
PubMed
UniProt
A0A014M399
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