Structure of PDB 7d2m Chain B Binding Site BS01

Receptor Information
>7d2m Chain B (length=112) Species: 1299 (Deinococcus radiodurans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SDYVPDAGHLVWLNFTPQAGHEQGGRRPALVLSPAAYNGVTGLMQACPVT
SRAKGYPFEVTLPAHLGVSGVVLADHCRSLDWRSRRAEQLAEAPADVLAE
VRGKLGSLLGMS
Ligand information
Ligand ID3PO
InChIInChI=1S/H5O10P3/c1-11(2,3)9-13(7,8)10-12(4,5)6/h(H,7,8)(H2,1,2,3)(H2,4,5,6)
InChIKeyUNXRWKVEANCORM-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341O[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O
OpenEye OEToolkits 1.5.0OP(=O)(O)OP(=O)(O)OP(=O)(O)O
ACDLabs 10.04O=P(OP(=O)(O)OP(=O)(O)O)(O)O
FormulaH5 O10 P3
NameTRIPHOSPHATE
ChEMBLCHEMBL1230191
DrugBankDB03896
ZINCZINC000006827739
PDB chain7d2m Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7d2m Functional and structural characterization of Deinococcus radiodurans R1 MazEF toxin-antitoxin system, Dr0416-Dr0417.
Resolution1.79 Å
Binding residue
(original residue number in PDB)		R29 T52 S53 R54
Binding residue
(residue number reindexed from 1)		R27 T50 S51 R52
Annotation score4
Enzymatic activity
Enzyme Commision number 3.1.27.-
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004521 RNA endonuclease activity
Biological Process
GO:0006402 mRNA catabolic process
GO:0016075 rRNA catabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7d2m, PDBe:7d2m, PDBj:7d2m
PDBsum7d2m
PubMed33527318
UniProtQ9RX98

[Back to BioLiP]