Structure of PDB 7bkd Chain B Binding Site BS01

Receptor Information
>7bkd Chain B (length=296) Species: 323259 (Methanospirillum hungatei JF-1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MHEYAFFLGCIAPNRYPGCEASAIKTSEKVGIKLLPLKGASCCPAPGAFG
SIDLNVWYAMAARNLVLAEEMKKDIALICNGCYKSIWEVNHILKHNDELR
DNVNEVLAEIDMQFKGTIDVWHLAELYYDDKVCGVQKIKDSVTTPLSGAK
VAAHYGCHLMKPKKERHFGDTENPMWFEELIGALGAEPIQYRNKMQCCGA
GGGVRGYDIVHALDITNEKLINIQEAGADAITELCPFCQLQFDRGQIEIK
EKFGDVYNIPVLHYNELLGLAQGMSPQDLALDLHAIDCTPFLQKVL
Ligand information
Ligand ID9S8
InChIInChI=1S/4Fe.4S
InChIKeyLJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.6S1[Fe][S]2[Fe]13S[Fe][S]3[Fe]2
CACTVS 3.385S1[Fe]S[Fe]S[Fe]S[Fe]1
FormulaFe4 S4
NameNon-cubane [4Fe-4S]-cluster
ChEMBL
DrugBank
ZINC
PDB chain7bkd Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7bkd Three-megadalton complex of methanogenic electron-bifurcating and CO 2 -fixing enzymes.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		G9 C10 C42 C43 C79 C82 F237
Binding residue
(residue number reindexed from 1)		G9 C10 C42 C43 C79 C82 F237
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity
GO:0051539 4 iron, 4 sulfur cluster binding
GO:0051912 CoB--CoM heterodisulfide reductase activity
Biological Process
GO:0015948 methanogenesis

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:7bkd, PDBe:7bkd, PDBj:7bkd
PDBsum7bkd
PubMed34516836
UniProtQ2FKZ2

[Back to BioLiP]