Structure of PDB 7b67 Chain B Binding Site BS01

Receptor Information
>7b67 Chain B (length=159) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PRGRRPGVGVGVGVVVTSCKHPRCVLLGKRKGSVGAGSFQLPGGHLEFGE
TWEECAQRETWEEAALHLKNVHFASVVNSFIEKENYHYVTILMKGEVDVT
HDSEPKNVEPEKNESWEWVPWEELPPLDQLFWGLRCLKEQGYDPFKEDLN
HLVGYKGNH
Ligand information
Ligand IDSYW
InChIInChI=1S/C22H22N4O5S/c1-14-13-25(21(27)16-3-6-19-15(11-16)7-8-24(19)2)9-10-26(14)32(29,30)17-4-5-18-20(12-17)31-22(28)23-18/h3-8,11-12,14H,9-10,13H2,1-2H3,(H,23,28)/t14-/m1/s1
InChIKeyRNXDBFXSUVUJIV-CQSZACIVSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC1CN(CCN1S(=O)(=O)c2ccc3c(c2)OC(=O)N3)C(=O)c4ccc5c(c4)ccn5C
OpenEye OEToolkits 2.0.7C[C@@H]1CN(CCN1S(=O)(=O)c2ccc3c(c2)OC(=O)N3)C(=O)c4ccc5c(c4)ccn5C
CACTVS 3.385C[CH]1CN(CCN1[S](=O)(=O)c2ccc3NC(=O)Oc3c2)C(=O)c4ccc5n(C)ccc5c4
CACTVS 3.385C[C@@H]1CN(CCN1[S](=O)(=O)c2ccc3NC(=O)Oc3c2)C(=O)c4ccc5n(C)ccc5c4
FormulaC22 H22 N4 O5 S
Name(R)-6-((2-methyl-4-(1-methyl-1H-indole-5-carbonyl)piperazin-1-yl)sulfonyl)benzo[d]oxazol-2(3H)-one;
6-[(2~{R})-2-methyl-4-(1-methylindol-5-yl)carbonyl-piperazin-1-yl]sulfonyl-3~{H}-1,3-benzoxazol-2-one;
TH7755
ChEMBL
DrugBank
ZINC
PDB chain7b67 Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7b67 Crystal structures of NUDT15 variants enabled by a potent inhibitor reveal the structural basis for thiopurine sensitivity.
Resolution1.45 Å
Binding residue
(original residue number in PDB)
G17 V18 G19 V40 L47 G50 Y92 Y94 T96 F137 W138 G139 L140
Binding residue
(residue number reindexed from 1)
G11 V12 G13 V34 L41 G44 Y86 Y88 T90 F131 W132 G133 L134
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.1.9: nucleotide diphosphatase.
External links
PDB RCSB:7b67, PDBe:7b67, PDBj:7b67
PDBsum7b67
PubMed33753169
UniProtQ9NV35|NUD15_HUMAN Nucleotide triphosphate diphosphatase NUDT15 (Gene Name=NUDT15)

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