Structure of PDB 7agm Chain B Binding Site BS01

Receptor Information
>7agm Chain B (length=216) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SNIAGMIVFLDPGHNGANDASIGRQVPTGRGGTKNCQESGTATDDGYPEH
SFTWDTTLRVRAALTALGVRTAMSRGNDNALGPCVDERAAMANSLRPHAI
VSIHADGGPPTGRGFHVLYSSPPLNAAQSGPSVQFAKVMRDQLAASGIPP
ATYIGQGGLNPRSDIAGLNLAQFPSVLVECGNMKNPVDSALMKSPEGRQK
YADAIVRGIAGFLGSQ
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain7agm Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB7agm Functional Characterization of the N -Acetylmuramyl-l-Alanine Amidase, Ami1, from Mycobacterium abscessus .
Resolution1.35 Å
Binding residue
(original residue number in PDB)		H51 E86 H141
Binding residue
(residue number reindexed from 1)		H14 E49 H104
Annotation score4
Enzymatic activity
Enzyme Commision number 3.5.1.28: N-acetylmuramoyl-L-alanine amidase.
Gene Ontology
Molecular Function
GO:0008745 N-acetylmuramoyl-L-alanine amidase activity
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
Biological Process
GO:0009253 peptidoglycan catabolic process
Cellular Component
GO:0030288 outer membrane-bounded periplasmic space

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7agm, PDBe:7agm, PDBj:7agm
PDBsum7agm
PubMed33158165
UniProtA0R5R2

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