Structure of PDB 6zq4 Chain B Binding Site BS01

Receptor Information

>6zq4 Chain B (length=510) Species: 759272 (Thermochaetoides thermophila DSM 1495)

GSFVGSIDQGTTSSRFLIFNGEGNPVASHQIEFENLYPKSGWHEQDPYEL
LNSVQQCIDGAMHKFASLGYSKENIRAIGITNQRETTVVWDSVTGEPLHN
AIVWPDTRTSALVRELKARQSADSLLELCGLPLSTYPSSVKLLWLIQNVD
AVKQAYEEGRLAFGTVDSWLIYKLNGGAQAERPIHVTDSTNASRTMFMNL
RTLQYDDKLLGFFGIDRNKIKLPKIVPSSDPEAFGKVATGALAGVPIAGC
LGDQSSALVGQCGFSPGQAKNTYGTGCFLLYNVGTEPVISKYGLLATVAY
DFGRGRKPVYALEGSIAVAGAGITFLMNNLGFAPKPSEINALAESVLDNG
GVVFVTAFSGLFAPYWIDDAKGTLFGITQHTTKGHIARATLEATCYQTRA
ILDAMEKDSGHKLESLAVDGGLSASDLCMQTQADISGIPVDRPRMRETTA
LGAAIAAGLATGVWRELDHVKESIAGGREVFYPKMDRKKAERLFRKWEQA
VEMSRGWVRE

Ligand information

• Ligand ID: PO4
• InChI: InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-3
• InChIKey: NBIIXXVUZAFLBC-UHFFFAOYSA-K
• SMILES:
  CACTVS 3.341: [O-][P]([O-])([O-])=O
  ACDLabs 10.04: [O-]P([O-])([O-])=O
  OpenEye OEToolkits 1.5.0: [O-]P(=O)([O-])[O-]
• Formula: O4 P
• Name: PHOSPHATE ION
• DrugBank: DB14523
• PDB chain: 6zq4 Chain B Residue 601

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6zq4 Structural Characterization of Glycerol Kinase from the Thermophilic Fungus Chaetomium thermophilum .
• Resolution: 2.02 Å
• Binding residue (original residue number in PDB): Y200 F342
• Binding residue (residue number reindexed from 1): Y136 F278
• Annotation score: 1

Enzymatic activity

• Enzyme Commision number: 2.7.1.30: glycerol kinase.

Gene Ontology

Molecular Function

• GO:0004370 glycerol kinase activity
• GO:0016301 kinase activity
• GO:0016773 phosphotransferase activity, alcohol group as acceptor

Biological Process

• GO:0005975 carbohydrate metabolic process
• GO:0006072 glycerol-3-phosphate metabolic process

External links

• PDB: RCSB:6zq4, PDBe:6zq4, PDBj:6zq4
• PDBsum: 6zq4
• PubMed: 33339113
• UniProt: G0SAG9