Structure of PDB 6ygd Chain B Binding Site BS01

Receptor Information
>6ygd Chain B (length=720) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PMEVDSILGSLSITDDFDQLVDVTSLFDELCSKLKPEAIVKDPRFDLFEG
THSLEVNNSKLDSSLIELTAEEIEFDVNVAYDPPLASVAAIADRLLRCVI
SWLNDYQTLPTTVLSCRYTESLLSSLVKGSSWCTGNILYDKVLGSCILGV
CYLTKFVQKLLSAGIVFEEEDLNFNNMGFNTFDNLPGQDVVINSLTESLQ
ILEAYSDDSLHLTMLKHILKIIICLVHLEDHLTDYSTKTSHLDELIENAN
SVNGIFPQLQLSPPKGAFSTYIQKHRSNQFPPRKITKLPTDYSGFITLAN
DVKTILLVDKAESALETYQFAKFFNKLEQRHVIARILFPLFFIRDDRTVL
GKFSYTQFYLLHVKEFSAQTPGNELIQESSNMLLEWYQNCSQNTCRYRQG
FNRQLILWDSLQAQFESVNSQVYCSWTYFMKLSSMIEFSLKGFDLDIYKP
FEAYSMFWYVYYLSHHLETFLKDSQNDIESNINAIHSMNKKLKKLKAGEK
KDQLRLKYRFAMDNEMEQLQATKQFLNYLLKEINITKSLCLIEVFQFAIL
KSFGLIDNKNSTPSKFSNERLIHNLRFKPFNSIGVPELPEYEVFQQTLKD
FVIEEKGAAFDIKLERATNFIETEVRNVVSSIDEIMQGIKGGDNNGVLVT
GTRLVQELSLEYYCKLKHTSKALSVNSKVIVNTLKKNIKNKDSHEYKVEL
VHTTEGWNYFPIQTLRIKQD
Ligand information
>6ygd Chain D (length=6) Species: 11008 (Saccharomyces cerevisiae virus L-A) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
MLRFVG
Receptor-Ligand Complex Structure
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PDB6ygd Divergent architecture of the heterotrimeric NatC complex explains N-terminal acetylation of cognate substrates.
Resolution2.752 Å
Binding residue
(original residue number in PDB)		H51 P284
Binding residue
(residue number reindexed from 1)		H52 P281
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004596 peptide alpha-N-acetyltransferase activity
GO:0005515 protein binding
Biological Process
GO:0016236 macroautophagy
GO:0017196 N-terminal peptidyl-methionine acetylation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0031417 NatC complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6ygd, PDBe:6ygd, PDBj:6ygd
PDBsum6ygd
PubMed33139728
UniProtQ02197|NAA35_YEAST N-alpha-acetyltransferase 35, NatC auxiliary subunit (Gene Name=MAK10)

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