Structure of PDB 6xwb Chain B Binding Site BS01

Receptor Information
>6xwb Chain B (length=319) Species: 2075419 (Thermomyces stellatus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MATMDKVFAGYAARQKAMEAAGNPLSEGIAWVEGEMVPLHEARIPMLDEG
FMRSDLTYDVPSVWDGRFFRLDDHLSRLEASCAKLRLKLPLPREEVKKIL
VEMVAKSGIRDAFVEIIVTRGLKGVRGSRPEEIVNRLYMLVQPYVWVMEP
EVQPVGGDAVIARTVRRVPPGSIDPTVKNLQWGDFVRGLFEASDRGATYP
FLTDGDANLTEGSGFNIVLVKDGVLYTPDRGVLQGVTRKSVIDVANAKGF
EVRVEYVPVEAAYHADEIFMCTTAGGIMPIRSLDGKPVNDGKVGPITKAI
WDGYWEMHYDPAYSFEIKY
Ligand information
Ligand IDPLP
InChIInChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKeyNGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04O=P(O)(O)OCc1cnc(c(O)c1C=O)C
FormulaC8 H10 N O6 P
NamePYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBLCHEMBL82202
DrugBankDB00114
ZINCZINC000001532514
PDB chain6xwb Chain B Residue 609 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6xwb An ( R )-Selective Transaminase From Thermomyces stellatus : Stabilizing the Tetrameric Form.
Resolution2.2 Å
Binding residue
(original residue number in PDB)		R77 K178 F185 E211 G214 F215 N216 L233 G235 V236 T237 T273
Binding residue
(residue number reindexed from 1)		R77 K178 F185 E211 G214 F215 N216 L233 G235 V236 T237 T273
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun Dec 1 17:31:50 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6xwb', asym_id = 'B', bs = 'BS01', title = 'An ( R )-Selective Transaminase From Thermomyces stellatus : Stabilizing the Tetrameric Form.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6xwb', asym_id='B', bs='BS01', title='An ( R )-Selective Transaminase From Thermomyces stellatus : Stabilizing the Tetrameric Form.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003824', uniprot = '', pdbid = '6xwb', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003824', uniprot='', pdbid='6xwb', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>