Structure of PDB 6x84 Chain B Binding Site BS01

Receptor Information
>6x84 Chain B (length=414) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SVTTIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAG
IAAFRTGNAPAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDESQFVP
TVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDL
ADYAAKLKASGMKCGYASGSQGSIQLENFSAWNGLPFASKNNGFDGTDAV
LEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSG
SLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYT
GVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTA
TRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQALDTAV
ERGNQLLRRFEKST
Ligand information
Ligand IDGOL
InChIInChI=1S/C3H8O3/c4-1-3(6)2-5/h3-6H,1-2H2
InChIKeyPEDCQBHIVMGVHV-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C(C(CO)O)O
ACDLabs 12.01
CACTVS 3.370		OCC(O)CO
FormulaC3 H8 O3
NameGLYCEROL;
GLYCERIN;
PROPANE-1,2,3-TRIOL
ChEMBLCHEMBL692
DrugBankDB09462
ZINCZINC000000895048
PDB chain6x84 Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6x84 A metabolite binding protein moonlights as a bile-responsive chaperone.
Resolution1.25 Å
Binding residue
(original residue number in PDB)		P5 N57 K293
Binding residue
(residue number reindexed from 1)		P6 N58 K294
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0001407 glycerophosphodiester transmembrane transport
GO:0015794 glycerol-3-phosphate transmembrane transport
GO:0055085 transmembrane transport
Cellular Component
GO:0016020 membrane
GO:0030288 outer membrane-bounded periplasmic space
GO:0042597 periplasmic space
GO:1902517 glycerol-3-phosphate-transporting ATPase complex

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6x84, PDBe:6x84, PDBj:6x84
PDBsum6x84
PubMed32882062
UniProtP0AG80|UGPB_ECOLI sn-glycerol-3-phosphate-binding periplasmic protein UgpB (Gene Name=ugpB)

[Back to BioLiP]