Structure of PDB 6vmw Chain B Binding Site BS01

Receptor Information
>6vmw Chain B (length=784) Species: 1365250 (Pseudoalteromonas luteoviolacea DSM 6061) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
CQYKIYPPLGIARVGNGPAIKPLSLSTPEVPWAHLYDTNVQYLVTQQELE
QLLEEAFGGNVINEISQIKTKLDERKFKQEEIETITGLLGLSHLVPQQQL
SRSLDNLEDIVQQIKGALLKVLSDHYLHAVKKQAQNFYIYKCDEGNPVEK
LKLTDGDKVTWRVEVANKKSFWYDYNNALDLSLHTQGSGNLSKNVSKHRL
APAMTAKRRNPNVITNSLRKQLVISSQGSVSSDNNTQVPLRGKFPARHNV
LQGSIECDNEGVLRFYAGNGISQALSPSSLNTDAADNSNWFDDICDGRVT
AVVELKNGDTFEIQDEQSSAWVATTPPDYAPQIEPIVTMYDMVSGAALKE
QDLDNLTTQFSDVFPILYRLYRMQWVNQADFTDNAVNTQIRELNSELGFA
QLLDNSASAKSLREGIFNQFRNPLFDQDIDVDDPGQSSNEWVSNSRIIPS
KDETNIAAKPATSSLKLPFYPNDGIDYPGSPVQWFAIPPFMYQHLQNWAA
GDFSVTQVEKESANTIEELGLFYSEQFKNSPNSALLCARGALDALYGGGF
HPGVELTWPMRHNLIYSQNDYVSSVTPEINLLGLREFRLKQDLQGLNSPN
MYQDFGHVIAVDNVTASIDPNSDAAWLWRSTPGDLTKWMGIPWQSDAASC
QAVYTPEDFPIPSWWAANLPVHVLPLARYNKFKDSQSADLPEINGMTHSI
AQGMSEETFEHLRLEQFSQRLDWLHTADLGFVGYHAEGGYTNGLIQMVSQ
WKNMAMVMARPVENPGSSGIPNVVYVAYSQADKD
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6vmw Chain B Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6vmw Roles of active-site residues in catalysis, substrate binding, cooperativity, and the reaction mechanism of the quinoprotein glycine oxidase.
Resolution1.99 Å
Binding residue
(original residue number in PDB)		D360 A362 I365 A699 N700
Binding residue
(residue number reindexed from 1)		D328 A330 I333 A667 N668
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0046872 metal ion binding

View graph for
Molecular Function
External links
PDB RCSB:6vmw, PDBe:6vmw, PDBj:6vmw
PDBsum6vmw
PubMed32234764
UniProtA0A161XU12

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