Structure of PDB 6vm6 Chain B Binding Site BS01

Receptor Information
>6vm6 Chain B (length=440) Species: 525244 (Acinetobacter sp. ATCC 27244) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GAIARVGFGYQDAFVLRSLPLWLSQSAFSHIVSEALSDIEVCYFSSEKSL
HVMYEAKNHSLTATEFWDEIRRFKSLFDTHPKNFIWFNLVCPSYNTAISP
LISKIDRLRSVSVNGRSEYLDWCVGKKIDFSLAEFALDYVGFITFNSENS
ESIFLSEIQDTINIELLRSQVKQLKDQFKNLISRSSFGPIYRKDFENFIC
HALEEDRSQWLLDPIKINLSASSSQYQDLNLDISDFNGPDRAQKTSSDWN
SLIKKAVSIGDFIHNSGDRRTLLIDGKQRMSTACMLGYVFSATRNFLLEI
EHNGLIYRTDDHKQKEGQFFTKIEAVEPQGETEAIVAIGFPTAIGKDIDS
TINEVKSLPRLNLESSHAIDNMETLNLAVREAKSALVSFKSENKLSKLHL
FIKAPSVFAMVLGHRLNGICDIQLYDWVDGQYIPTAELNL
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6vm6 CBASS Immunity Uses CARF-Related Effectors to Sense 3'-5'- and 2'-5'-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection.
Resolution2.1 Å
Binding residue
(original residue number in PDB)		N259 K299 Q300 R301 M302 H324 D369 A390 K425 P427 S428 W449 Y454
Binding residue
(residue number reindexed from 1)		N237 K277 Q278 R279 M280 H302 D347 A368 K403 P405 S406 W427 Y432
Enzymatic activity
Enzyme Commision number 3.1.-.-
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003677 DNA binding
GO:0004518 nuclease activity
GO:0004519 endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0051607 defense response to virus

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:6vm6, PDBe:6vm6, PDBj:6vm6
PDBsum6vm6
PubMed32544385
UniProtC0VHC9|CAP4_ACIS2 CD-NTase-associated protein 4 (Gene Name=cap4)

[Back to BioLiP]