Structure of PDB 6v33 Chain B Binding Site BS01

Receptor Information
>6v33 Chain B (length=245) Species: 200452 (Pseudomonas congelans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SPIRLLVVSDNKPLSATLLQCIEALAGDLTVDVDLRYTAYNHTPQSMVDL
GARVIDVKDESVVDLIIEHYDLVLSVHCKQLFPKRLVEGVRCINFHPGFN
PFNRGWYPQAFSILNGLPAGATIHVMDEAIDHGHIIVQRQVEVGSGDTSL
EVYNKVVEVEKALMHECLADILQGQYEVFKPLSEGNYNGIKAYNELCQLD
LEETGSLRDHINLLRATSHGDFKNAYFIDESGDKYFIKVVLEKAL
Ligand information
Ligand ID0FX
InChIInChI=1S/C16H27N3O14P2/c1-6-4-19(16(24)18-14(6)23)10-3-8(20)9(31-10)5-29-34(25,26)33-35(27,28)32-15-13(22)12(21)11(17)7(2)30-15/h4,7-13,15,20-22H,3,5,17H2,1-2H3,(H,25,26)(H,27,28)(H,18,23,24)/t7-,8+,9-,10-,11-,12+,13-,15-/m1/s1
InChIKeyUIVJXHWSIFBBCY-LPGAPTBISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(CC(O2)N3C=C(C(=O)NC3=O)C)O)O)O)N
CACTVS 3.370C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH](O)[CH]1N
OpenEye OEToolkits 1.7.6C[C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H](C[C@@H](O2)N3C=C(C(=O)NC3=O)C)O)O)O)N
CACTVS 3.370C[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@@H](O)[C@@H]1N
ACDLabs 12.01O=C1C(=CN(C(=O)N1)C2OC(C(O)C2)COP(=O)(OP(=O)(OC3OC(C(N)C(O)C3O)C)O)O)C
FormulaC16 H27 N3 O14 P2
NamedTDP-4-amino-4,6-dideoxyglucose
ChEMBL
DrugBank
ZINCZINC000030725213
PDB chain6v33 Chain B Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6v33 Misannotations of the genes encoding sugar N-formyltransferases.
Resolution2.03 Å
Binding residue
(original residue number in PDB)		N21 H87 K89 W116 Y117 Q119 Y163 H229 F232 N234
Binding residue
(residue number reindexed from 1)		N11 H77 K79 W106 Y107 Q109 Y153 H219 F222 N224
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0004479 methionyl-tRNA formyltransferase activity
Biological Process
GO:0006413 translational initiation
GO:0009058 biosynthetic process
GO:0071951 conversion of methionyl-tRNA to N-formyl-methionyl-tRNA
Cellular Component
GO:0005829 cytosol

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6v33, PDBe:6v33, PDBj:6v33
PDBsum6v33
PubMed31867814
UniProtA0A0N8R1B2

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