Structure of PDB 6umq Chain B Binding Site BS01

Receptor Information
>6umq Chain B (length=415) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VPASLSGQDVGSFAYLTIKDRIPQILTKVIDTLHRHKSEFFEKHGEEGVE
AEKKAISLLSKLRNELQTDKPFIPLVEKFVDTDIWNQYLEYQQSLLNESD
GKSRWFYSPWLLVECYMYRRIHEAIIQSPPIDYFDVFKESKEQNFYGSQE
SIIALCTHLQQLIRTIEDLDENQLKDEFFKLLQISLWLEDLKPFILLNDM
EHLWSLLSNCKKTREKASATRVYIVLDNSGFELVTDLILADFLLSSELAT
EVHFYGKTIPWFVSDTTIHDFNWLIEQVKHSNHKWMSKCGADWEEYIKMG
KWVYHNHIFWTLPHEYCAMPQVAPDLYAELQKAHLILFKGDLNYRKLTGD
RKWEFSVPFHQALNGFHPAPLCTIRTLKAEIQVGLQPGQGEQLLASEPSW
WTTGKYGIFQYDGPL
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain6umq Chain B Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6umq Human ARMT1 structure and substrate specificity indicates that it is a DUF89 family damage-control phosphatase.
Resolution1.85 Å
Binding residue
(original residue number in PDB)		D253 N254 D291
Binding residue
(residue number reindexed from 1)		D227 N228 D265
Annotation score1
Enzymatic activity
Enzyme Commision number 2.1.1.-
3.1.3.-
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0008168 methyltransferase activity
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
GO:0008983 protein-glutamate O-methyltransferase activity
GO:0016787 hydrolase activity
GO:0016791 phosphatase activity
GO:0019899 enzyme binding
GO:0046872 metal ion binding
GO:0051998 protein carboxyl O-methyltransferase activity
GO:0097023 fructose 6-phosphate aldolase activity
GO:0103026 fructose-1-phosphatase activity
Biological Process
GO:0006974 DNA damage response
GO:0032259 methylation

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Molecular Function
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Biological Process
External links
PDB RCSB:6umq, PDBe:6umq, PDBj:6umq
PDBsum6umq
PubMed32682077
UniProtQ9H993|ARMT1_HUMAN Damage-control phosphatase ARMT1 (Gene Name=ARMT1)

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