Structure of PDB 6uj1 Chain B Binding Site BS01

Receptor Information
>6uj1 Chain B (length=357) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
FLAMVDNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYI
DTYFDTERSSTYRSKGFDVTVKYTQGSWTGFVGEDLVTIPKGFNTSFLVN
IATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPN
VFSMQMCGAGLNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEI
GGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLISDGF
WTGSQLACWTNETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPMECY
RFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPCAEIAGAAVSEI
SGPFNCV
Ligand information
Ligand IDL3M
InChIInChI=1S/C34H52N4O5S/c1-6-11-31(39)32(34(41)36-22-24(3)4)35-23-29-19-26-15-10-14-25(17-26)12-8-9-13-27-18-28(33(40)37-29)21-30(20-27)38(16-7-2)44(5,42)43/h10,14-15,17-18,20-21,24,29,31-32,35,39H,6-9,11-13,16,19,22-23H2,1-5H3,(H,36,41)(H,37,40)/t29-,31-,32-/m0/s1
InChIKeyBUVUUWHTEARFCT-GOBOWQCMSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCC[C@H](O)[C@H](NC[C@@H]1Cc2cccc(CCCCc3cc(cc(c3)C(=O)N1)N(CCC)[S](C)(=O)=O)c2)C(=O)NCC(C)C
ACDLabs 12.01O=C3c1cc(cc(c1)CCCCc2cc(ccc2)CC(CNC(C(CCC)O)C(=O)NCC(C)C)N3)N(CCC)S(C)(=O)=O
OpenEye OEToolkits 2.0.7CCCC(C(C(=O)NCC(C)C)NCC1Cc2cccc(c2)CCCCc3cc(cc(c3)N(CCC)S(=O)(=O)C)C(=O)N1)O
OpenEye OEToolkits 2.0.7CCC[C@@H]([C@@H](C(=O)NCC(C)C)NC[C@@H]1Cc2cccc(c2)CCCCc3cc(cc(c3)N(CCC)S(=O)(=O)C)C(=O)N1)O
CACTVS 3.385CCC[CH](O)[CH](NC[CH]1Cc2cccc(CCCCc3cc(cc(c3)C(=O)N1)N(CCC)[S](C)(=O)=O)c2)C(=O)NCC(C)C
FormulaC34 H52 N4 O5 S
Name(3S)-3-hydroxy-N-(2-methylpropyl)-N~2~-{[(4S)-17-[(methylsulfonyl)(propyl)amino]-2-oxo-3-azatricyclo[13.3.1.1~6,10~]icosa-1(19),6(20),7,9,15,17-hexaen-4-yl]methyl}-L-norleucinamide
ChEMBL
DrugBank
ZINC
PDB chain6uj1 Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6uj1 A Structure-Based Discovery Platform for BACE2 and the Development of Selective BACE Inhibitors.
Resolution3.03 Å
Binding residue
(original residue number in PDB)
L46 D48 Y87 T88 Q89 F124 W131 Y211 D241 G243 T244 T245 L246 R248 S337
Binding residue
(residue number reindexed from 1)
L32 D34 Y73 T74 Q75 F110 W117 Y190 D220 G222 T223 T224 L225 R227 S305
Annotation score1
Enzymatic activity
Enzyme Commision number 3.4.23.45: memapsin 1.
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis
Cellular Component
GO:0016020 membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6uj1, PDBe:6uj1, PDBj:6uj1
PDBsum6uj1
PubMed33544569
UniProtQ9Y5Z0|BACE2_HUMAN Beta-secretase 2 (Gene Name=BACE2)

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