Structure of PDB 6uer Chain B Binding Site BS01

Receptor Information

>6uer Chain B (length=187) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

VDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVI
MRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFK
DFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYEPELFPGLIYRMKVPKIV
LLIFVSGKIVITGAKMRDETYKAFENIYPVLSEFRKI

Ligand information

>6uer Chain E (length=14) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

gctataaacgggca

Receptor-Ligand Complex Structure

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Structure summary

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PDB	6uer DNA mismatches reveal conformational penalties in protein-DNA recognition.
Resolution	2.5 Å
Binding residue (original residue number in PDB)	V29 T31 A58 F74 S76 V80 Q116 N117 L147 F148 I152 L163 T173
Binding residue (residue number reindexed from 1)	V18 T20 A47 F63 S65 V69 Q105 N106 L136 F137 I141 L152 T162

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003677	DNA binding
GO:0005515	protein binding

	Biological Process
GO:0005975	carbohydrate metabolic process
GO:0006352	DNA-templated transcription initiation

	Cellular Component
GO:0005634	nucleus

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Molecular Function

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Cellular Component

External links

PDB	RCSB:6uer, PDBe:6uer, PDBj:6uer
PDBsum	6uer
PubMed	33087930
UniProt	P28147\|TBP1_ARATH TATA-box-binding protein 1 (Gene Name=TBP1)

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