Structure of PDB 6t2c Chain B Binding Site BS01

Receptor Information
>6t2c Chain B (length=626) Species: 1129347 (Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MDVNPMLIFLKVPVQNAISTTFPYTGDPPYSHGTGTGYTMDTVIRTHDYS
SRGIWKTNSETGAQQLNPIDGPLPEDNEPSGYAQTDCVLELIEGLDRSHP
GLFETACQETIDAIQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVF
RKNGYKLNESGRLIDFLKDVLLSFENDSMEVTTHKKRVKLTKKNYLIRAL
TLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVELLARNICERLEQSGLP
VGGNEKKAKLANVIKKMMAKSTDEELSYTITGDNTKWNENQNPRIFLAMV
LRITAGQPEWFRDLLAVAPIMFSNKVARLGRGYMFESKSMHLRTQISAEN
LSDINLRYFNEDTKKKIEKIRHLMVEGTASLSPGMMMGMFNMLSTVLGVS
VLNLGQREILKRTYWWDGLQSSDDFALIINGHFKEDIQQGVNHFYRTCKL
VGINMSQKKSYINKTGTFEFTSFFYRYGFVANFSMELPSFGVAGNNESAD
MSIGTTVIKTNMINNDLGPATAQMAIQLFIKDYRYTYRCHRGDTNLETRR
TKSIKRLWTETISKAGLLVADGGPNPYNLRNLHIPEVCLKWSLMDPDYRG
RLCNPNNPFVYDAVATTHSWTPKRNR
Ligand information
>6t2c Chain V (length=29) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aguaguaacaagagguauaccucucugcu
.<<....>>.<<<<<<..>>>>>>.....
Receptor-Ligand Complex Structure
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PDB6t2c A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase.
Resolution3.52 Å
Binding residue
(original residue number in PDB)		H32 T34 Y38 M356 R365 K553 Y557 R560 L568 E569 R571
Binding residue
(residue number reindexed from 1)		H32 T34 Y38 M334 R343 K531 Y535 R538 L546 E547 R549
Enzymatic activity
Enzyme Commision number 2.7.7.48: RNA-directed RNA polymerase.
Gene Ontology
Molecular Function
GO:0000166 nucleotide binding
GO:0003723 RNA binding
GO:0003968 RNA-dependent RNA polymerase activity
GO:0034062 5'-3' RNA polymerase activity
Biological Process
GO:0001172 RNA-templated transcription
GO:0019083 viral transcription
GO:0039523 symbiont-mediated suppression of host mRNA transcription via inhibition of RNA polymerase II activity
GO:0039694 viral RNA genome replication
Cellular Component
GO:0005737 cytoplasm
GO:0030430 host cell cytoplasm
GO:0042025 host cell nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6t2c, PDBe:6t2c, PDBj:6t2c
PDBsum6t2c
PubMed32304664
UniProtH6QM91

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