Structure of PDB 6sz8 Chain B Binding Site BS01

Receptor Information
>6sz8 Chain B (length=164) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRS
ARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVF
KIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFP
PDESIDLYQVIHKM
Ligand information
Ligand IDM1Z
InChIInChI=1S/C8H11N3O2/c12-7-5-6(9-8(13)10-7)11-3-1-2-4-11/h1-5H2,(H,10,12,13)
InChIKeyVVOJYMDKNPHWLV-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C1CCN(C1)C2=NC(=O)NC(=O)C2
CACTVS 3.385O=C1CC(=NC(=O)N1)N2CCCC2
FormulaC8 H11 N3 O2
Name6-pyrrolidin-1-yl-5~{H}-pyrimidine-2,4-dione
ChEMBL
DrugBank
ZINC
PDB chain6sz8 Chain B Residue 601 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6sz8 Selectively Disrupting m6A-Dependent Protein-RNA Interactions with Fragments.
Resolution1.47 Å
Binding residue
(original residue number in PDB)		K361 W377 S378 T379 R404 W428 D476
Binding residue
(residue number reindexed from 1)		K18 W34 S35 T36 R61 W85 D133
Annotation score1
Binding affinityMOAD: ic50>1000uM
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Molecular Function
External links
PDB RCSB:6sz8, PDBe:6sz8, PDBj:6sz8
PDBsum6sz8
PubMed32101404
UniProtA0A2K6KCS5

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