Structure of PDB 6sml Chain B Binding Site BS01

Receptor Information
>6sml Chain B (length=911) Species: 242619 (Porphyromonas gingivalis W83) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QVVVLGYGTGQKLSTVSGSVAKVSSEKLAEKPVANIMDALQGQVAGMQVM
TTSGDPTAVASVEIHGTGSLGASSAPLYIVDGMQTSLDVVATMNPNDFES
MSVLKDASATSIYGARAANGVVFIQTKKGKMSERGRITFNASYGISQILN
TKPLDNMMTGDELLDFQVKAGFWGNNQTVQKVKDMILAGAEDLYGNYDSL
KDEYGKTLFPVDFNHDADWLKALFKTAPTSQGDISFSGGSQGTSYYASIG
YFDQEGMAREPANFKRYSGRLNFESRINEWLKVGANLSGAIANRRSADYF
GKYYMGSGTFGVLTMPRYYNPFDVNGDLADVYYMYGATRPSMTEPYFAKM
RPFSSESHQANVNGFAQITPIKGLTLKAQAGVDITNTRTSSKRMPNNPYD
STPLGERRERAYRDVSKSFTNTAEYKFSIDEKHDLTALMGHEYIEYEGDV
IGASSKGFESDKLMLLSQGKTGNSLSLPEHRVAEYAYLSFFSRFNYGFDK
WMYIDFSVRNDQSSRFGSNNRSAWFYSVGGMFDIYNKFIQESNWLSDLRL
KMSYGTTGNSEIGNYNHQALVTVNNYTEDAMGLSISTAGNPDLSWEKQSQ
FNFGLAAGAFNNRLSAEVDFYVRTTNDMLIDVPMPYISGFFSQYQNVGSM
KNTGVDLSLKGTIYQNKDWNVYASANFNYNRQEITKLFFGLNKYMLPNTG
TIWEIGYPNSFYMAEYAGIDKKTGKQLWYVPGQVDKVTTSQYSADLETRI
DKSVTPPITGGFSLGASWKGLSLDADFAYIVGKWMINNDRYFTENGGGLM
QLNKDKMLLNAWTEDNKETDVPKLGQSPQFDTHLLENASFLRLKNLKLTY
VLPNSLFAGQNVIGGARVYLMARNLLTVTKYKGFDPEAGGNVGKNQYPNS
KQYVAGIQLSF
Ligand information
>6sml Chain C (length=12) Species: 242619 (Porphyromonas gingivalis W83) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
GTGGSTGTTSAG
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6sml Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis.
Resolution3.4 Å
Binding residue
(original residue number in PDB)		Y401 Y405 Y406 M407 E446 N894 Y897 F898 F936 K1000
Binding residue
(residue number reindexed from 1)		Y299 Y303 Y304 M305 E344 N788 Y791 F792 F830 K894
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009279 cell outer membrane

View graph for
Cellular Component
External links
PDB RCSB:6sml, PDBe:6sml, PDBj:6sml
PDBsum6sml
PubMed32393857
UniProtQ7MXJ7

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