Structure of PDB 6ryk Chain B Binding Site BS01

Receptor Information

>6ryk Chain B (length=132) Species: 246197 (Myxococcus xanthus DK 1622) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

SGRVTTVLLPLEKLQDESAFKLRPEGDVSGLATDIARLGQLFPVDVRPAG
EDRYQLVCGFRRVAALRFLKRDAVQARIHLRLSDEDALVMSLAEAIHATP
VGPEVLEAKRDELEAQGRLSAAVRDMLEKALA

Ligand information

Ligand ID

CTP

InChI

InChI=1S/C9H16N3O14P3/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(24-8)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,21,22)(H2,10,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1

InChIKey

PCDQPRRSZKQHHS-XVFCMESISA-N

SMILES

Software	SMILES
OpenEye OEToolkits 1.5.0	C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O
OpenEye OEToolkits 1.5.0	C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O
CACTVS 3.341	NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O
ACDLabs 10.04	O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)C(O)C2O
CACTVS 3.341	NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O

Formula

C9 H16 N3 O14 P3

Name

CYTIDINE-5'-TRIPHOSPHATE

PDB chain

6ryk Chain A Residue 502 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	6ryk ParB-type DNA Segregation Proteins Are CTP-Dependent Molecular Switches.
Resolution	1.7 Å
Binding residue (original residue number in PDB)	E382 H385 A386 T387
Binding residue (residue number reindexed from 1)	E94 H97 A98 T99
Annotation score	4

Enzymatic activity

Enzyme Commision number

External links

PDB	RCSB:6ryk, PDBe:6ryk, PDBj:6ryk
PDBsum	6ryk
PubMed	31835030
UniProt	Q1D3H3\|PADC_MYXXD ParBC domain-containing protein (Gene Name=padC)

[Back to BioLiP]