Structure of PDB 6rt8 Chain B Binding Site BS01

Receptor Information
>6rt8 Chain B (length=314) Species: 4058 (Catharanthus roseus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DETIWDLSPYIKIFKDGRVERLHNSPYVPPSLNDPETGVSWKDVPISSQV
SARVYIPKISDHEKLPIFVYVHGAGFCLESAFRSFFHTFVKHFVAETKVI
GVSIEYRLAPEHLLPAAYEDCWEALQWVASHVGLDTAIDKDPWIINYGDF
DRLYLAGDSPGANIVHNTLIRAGKEKLKGGVKILGAILYYPYFIIPTSTK
LSDDFEYNYTCYWKLAYPNAPGGMNNPMINPIAENAPDLAGYGCSRLLVT
LVSMISTTPDETKDINAVYIEALEKSGWKGELEVADFDADYFELFTLETE
MGKNMFRRLASFIK
Ligand information
Ligand IDKJE
InChIInChI=1S/C21H25N2O2/c1-3-14-10-15-11-18(21(24)25-2)20-17(8-9-23(12-14)13-15)16-6-4-5-7-19(16)22-20/h4-7,10,12,15,17-18H,3,8-9,11,13H2,1-2H3/q+1/t15-,17+,18+/m0/s1
InChIKeyULODILYUCKTWMV-CGTJXYLNSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCC1=C[C@H]2C[C@@H](C(=O)OC)C3=Nc4ccccc4[C@H]3CC[N@@+](=C1)C2
OpenEye OEToolkits 2.0.7CCC1=CC2CC(C3=Nc4ccccc4C3CC[N+](=C1)C2)C(=O)OC
OpenEye OEToolkits 2.0.7CCC1=C[C@H]2C[C@H](C3=Nc4ccccc4C3CC[N+](=C1)C2)C(=O)OC
CACTVS 3.385CCC1=C[CH]2C[CH](C(=O)OC)C3=Nc4ccccc4[CH]3CC[N+](=C1)C2
FormulaC21 H25 N2 O2
Name18-carboxymethoxy-cleaviminium
ChEMBL
DrugBank
ZINC
PDB chain6rt8 Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6rt8 Structural basis of cycloaddition in biosynthesis of iboga and aspidosperma alkaloids.
Resolution2.19 Å
Binding residue
(original residue number in PDB)
Y18 A82 G83 S172 P173 Y205 Y225 I268 Y304
Binding residue
(residue number reindexed from 1)
Y10 A74 G75 S159 P160 Y192 Y212 I255 Y291
Annotation score1
Enzymatic activity
Enzyme Commision number 4.-.-.-
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0016829 lyase activity
Biological Process
GO:0009820 alkaloid metabolic process
Cellular Component
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:6rt8, PDBe:6rt8, PDBj:6rt8
PDBsum6rt8
PubMed32066966
UniProtA0A2P1GIW2|CS_CATRO Catharanthine synthase (Gene Name=CS)

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