Structure of PDB 6pwk Chain B Binding Site BS01

Receptor Information
>6pwk Chain B (length=405) Species: 914149 (Vibrio cholerae O1 str. 2010EL-1786) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AFKAQAKEAQQLRERAYLDPVSHLGNRAYYMSQLSGWLSESGIGGVAILQ
AEFIKELYEEKGYEAGDGMVRELADRLKNSITIKDISIARISTYEFGIIM
PNMDETELKIVAESIITCVDDINNLSLGVVSNKRQSSTTTLLSLLDNALA
KAKSNPELNYGFISSDTDKIILGKQQWKTLVEEAIHNDWFTFRYQAANSS
WGKTFHREVFSAFEKDGVRYTANQFLFALEQLNASHIFDQYVIERVIQQL
EKGELTDPLAINIAQGSISQPSFIRWISQTLSKHLSVANLLHFEIPEGCF
VNEPHYTALFCNAVRNAGADFGVDNYGRNFQSLDYINEFRPKYVKLDYLF
THHLDDERQKFTLTSISRTAHNLGITTIASRVETQTQLDFLSEHFIEVFQ
GFIVD
Ligand information
Ligand IDC2E
InChIInChI=1S/C20H24N10O14P2/c21-19-25-13-7(15(33)27-19)23-3-29(13)17-9(31)11-5(41-17)1-39-45(35,36)44-12-6(2-40-46(37,38)43-11)42-18(10(12)32)30-4-24-8-14(30)26-20(22)28-16(8)34/h3-6,9-12,17-18,31-32H,1-2H2,(H,35,36)(H,37,38)(H3,21,25,27,33)(H3,22,26,28,34)/t5-,6-,9-,10-,11-,12-,17-,18-/m1/s1
InChIKeyPKFDLKSEZWEFGL-MHARETSRSA-N
SMILES
SoftwareSMILES
ACDLabs 11.02O=C7NC(=Nc1c7ncn1C6OC5COP(=O)(OC4C(OC(n2c3N=C(N)NC(=O)c3nc2)C4O)COP(=O)(O)OC5C6O)O)N
OpenEye OEToolkits 1.7.0c1nc2c(n1C3C(C4C(O3)COP(=O)(OC5C(COP(=O)(O4)O)OC(C5O)n6cnc7c6N=C(NC7=O)N)O)O)N=C(NC2=O)N
OpenEye OEToolkits 1.7.0c1nc2c(n1[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@@](=O)(O[C@@H]5[C@@H](CO[P@@](=O)(O4)O)O[C@H]([C@@H]5O)n6cnc7c6N=C(NC7=O)N)O)O)N=C(NC2=O)N
CACTVS 3.352NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[CH]4[CH]3O)n6cnc7C(=O)NC(=Nc67)N
CACTVS 3.352NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](O)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@H]4[C@H]3O)n6cnc7C(=O)NC(=Nc67)N
FormulaC20 H24 N10 O14 P2
Name9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one);
c-di-GMP;
Cyclic diguanosine monophosphate
ChEMBLCHEMBL1231573
DrugBank
ZINCZINC000072319544
PDB chain6pwk Chain B Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6pwk A Conserved Regulatory Circuit Controls Large Adhesins in Vibrio cholerae.
Resolution2.61 Å
Binding residue
(original residue number in PDB)
R423 Q425 F440 S441 A452 N453 F468 D469 N492 R611 E613 G631 F632
Binding residue
(residue number reindexed from 1)
R193 Q195 F210 S211 A222 N223 F238 D239 N262 R381 E383 G401 F402
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links