Structure of PDB 6pl6 Chain B Binding Site BS01

Receptor Information
>6pl6 Chain B (length=577) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GTGRIHALALFFALALFLLGLRAWQLQVLEYERYALRSQGNYLKTEDIPA
PRGKILDRKGRVLAQDRLVVDLVYTGGEVAFKERLLPLLGLEDLPQVTEP
TVLKAGVPEALRPTLEELTAGQKNLYLRERIERYYPNPISGPVMGYVLRA
NAAQVKQGYSPEEEVGQAGLEAALEPYLRGKRGVRAVEVNVRGERLRETV
LEEPTPGQDVVLTLDLALQRAAEKALEEALADINAGRRLNGLPEEKQVKG
AIVALDPTTGEVLAMASAPSFDPNLFAKRPVPEEAKALLEDKNLPLLNRA
VQPYTPGSTFKLATSYALLEEGYVTPATTYRCSPYIVFGGQVRRNWASRD
MGPMTVREAIAWSCNTWYYQAVAQDPLGFVDRLARRARLLGLGEATGLEV
AEKTGLLPTRAWKREAPWYPGETLSVAIGQGAVLATPAQIARMLATIATG
GNKPALHLVKAIGGVPVQPRWEKVPGRYWKVLQEGLRKTVSEGTARFVLG
EFPVPTGGKTGTAETPGKRRGLEHAWYMGYGPTDGSPYPPLVVVAFFENG
GEGSRVALPAVRKVMAAYWGIKGSLEV
Ligand information
>6pl6 Chain D (length=11) Species: 300852 (Thermus thermophilus HB8) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
AAAAAAAAAAA
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6pl6 Structural coordination of polymerization and crosslinking by a SEDS-bPBP peptidoglycan synthase complex.
Resolution3.3 Å
Binding residue
(original residue number in PDB)		Q65 E129
Binding residue
(residue number reindexed from 1)		Q65 E129
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0008658 penicillin binding
GO:0071972 peptidoglycan L,D-transpeptidase activity
Biological Process
GO:0071555 cell wall organization
Cellular Component
GO:0016020 membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6pl6, PDBe:6pl6, PDBj:6pl6
PDBsum6pl6
PubMed32152588
UniProtQ5SJ23

[Back to BioLiP]