Structure of PDB 6omq Chain B Binding Site BS01

Receptor Information
>6omq Chain B (length=356) Species: 58346 (Streptomyces platensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MEKLWLNSADSHVLEPDDLWERALPAALRDRAPRCVRDNGRETVYVDGQV
VRRDPLDFADAMRPPGALDHHIRLKDLDDQGIWGEVVFPSRGLWTAVMTD
PVLARECIKVYNDWLKSDFLSLSPRLVGAAMVSMLDTDDAVAELRRAADL
GYQTVFLAATPPPGREFNMDVWEPLWAAAEEAGMTVSIHIGTGADTVVAR
GPGGAVINYVETLFPAQRAVAQLVASGALDRHPGLRVLIAEAGCAWVPAL
ADRMDEAYRQHGMFVRPKLSMLPGELVRRQVYASFQHDETAIGAVTAMNY
TNVLWGSDYPHLEGTFPRTQEVVTELFAGVDPEVRDLITRRNFTDLFTVP
ALPATV
Ligand information
Ligand IDMZD
InChIInChI=1S/C31H51N2O10PS/c1-27(2,17-42-44(39,40)41)24(36)25(37)33-10-7-22(35)32-11-12-45-26(38)29(4)9-6-8-28(3)20(29)14-21(34)31-15-18-13-19(23(28)31)43-30(18,5)16-31/h18-21,23-24,34,36H,6-17H2,1-5H3,(H,32,35)(H,33,37)(H2,39,40,41)/t18-,19+,20+,21-,23+,24+,28-,29-,30+,31+/m1/s1
InChIKeyWNJOABVUVJTUCG-HDNPFTGKSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CC12CCCC(C1CC(C34C2C5CC(C3)C(C4)(O5)C)O)(C)C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O
CACTVS 3.385CC(C)(CO[P](O)(O)=O)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)[C@]1(C)CCC[C@]2(C)[C@@H]1C[C@@H](O)[C@]34C[C@H]5C[C@H](O[C@@]5(C)C3)[C@@H]24
OpenEye OEToolkits 2.0.7C[C@@]12CCC[C@@]([C@H]1C[C@H]([C@]34[C@H]2[C@@H]5C[C@H](C3)[C@](C4)(O5)C)O)(C)C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O
ACDLabs 12.01C3C15C(C2(CCCC(C)(C2CC1O)C(=O)SCCNC(=O)CCNC(C(C(COP(O)(O)=O)(C)C)O)=O)C)C4OC3(C)C(C4)C5
CACTVS 3.385CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCSC(=O)[C]1(C)CCC[C]2(C)[CH]1C[CH](O)[C]34C[CH]5C[CH](O[C]5(C)C3)[CH]24
FormulaC31 H51 N2 O10 P S
NameS-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] (5beta,7alpha,8alpha,10alpha,11alpha,13alpha)-7-hydroxy-11,16-epoxykaurane-18-thioate
ChEMBL
DrugBank
ZINC
PDB chain6omq Chain B Residue 405 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6omq Characterization and Crystal Structure of a Nonheme Diiron Monooxygenase Involved in Platensimycin and Platencin Biosynthesis.
Resolution1.86 Å
Binding residue
(original residue number in PDB)
R52 M62 G191 T196 G204 N208 E313
Binding residue
(residue number reindexed from 1)
R52 M62 G191 T196 G204 N208 E313
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0016829 lyase activity
GO:0016831 carboxy-lyase activity
GO:0046872 metal ion binding
Biological Process
GO:0019748 secondary metabolic process
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6omq, PDBe:6omq, PDBj:6omq
PDBsum6omq
PubMed31291107
UniProtA0A0A0UVH9

[Back to BioLiP]