Structure of PDB 6oh4 Chain B Binding Site BS01

Receptor Information
>6oh4 Chain B (length=299) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
YCLTVMTLVAAAYTVALRYTRTTAEELYFSTTAVCITEVIKLLISVGLLA
KETGSLGRFKASLSENVLGSPKELAKLSVPSLVYAVQNNMAFLALSNLDA
AVYQVTYQLKIPCTALCTVLMLNRTLSKLQWISVFMLCGGVTLVQWKPAV
VVAQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSSDTSLWVRNIQMYLSGI
VVTLAGTYLSDGAEIQEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTD
NIMKGFSAAAAIVLSTIASVLLFGLQITLSFALGALLVCVSIYLYGLPR
Ligand information
Ligand IDC5P
InChIInChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKeyIERHLVCPSMICTF-XVFCMESISA-N
SMILES
SoftwareSMILES
CACTVS 3.341NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
OpenEye OEToolkits 1.5.0C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)O)O)O
CACTVS 3.341NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
ACDLabs 10.04O=C1N=C(N)C=CN1C2OC(C(O)C2O)COP(=O)(O)O
FormulaC9 H14 N3 O8 P
NameCYTIDINE-5'-MONOPHOSPHATE
ChEMBLCHEMBL307679
DrugBankDB03403
ZINCZINC000003861744
PDB chain6oh4 Chain B Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6oh4 Structural basis for mammalian nucleotide sugar transport.
Resolution3.38 Å
Binding residue
(original residue number in PDB)		K55 Y98 Q101 N102 Y121 K124 S188 F195 M213 Y214 G257 K272
Binding residue
(residue number reindexed from 1)		K41 Y84 Q87 N88 Y107 K110 S170 F177 M195 Y196 G239 K254
Annotation score3
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005456 CMP-N-acetylneuraminate transmembrane transporter activity
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity
GO:0015297 antiporter activity
Biological Process
GO:0015782 CMP-N-acetylneuraminate transmembrane transport
GO:0090481 pyrimidine nucleotide-sugar transmembrane transport
Cellular Component
GO:0000139 Golgi membrane
GO:0005794 Golgi apparatus
GO:0016020 membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6oh4, PDBe:6oh4, PDBj:6oh4
PDBsum6oh4
PubMed30985278
UniProtQ61420|S35A1_MOUSE CMP-sialic acid transporter (Gene Name=Slc35a1)

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