Structure of PDB 6m4j Chain B Binding Site BS01
Receptor Information
>6m4j Chain B (length=347) Species:
47951
(Vibrio cyclitrophicus) [
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TKYFDYAASTPVAKGVLESMKPWQSDSFANPSAAHIEAEKALNAIKQARE
IIADTLGAMPSEIVFTCGASESNNLAIKGLAFKRLEEKGHLITSSIEHKC
VLNTCGFLESIGFDVTYLTPKASGLISAQQVEEAIRPNTFLITIHHVNNE
LGTVQPIEDIGNVAFEHDIPFHTDAAQSFCKLDIDVDDMNIDMLSLSGHK
VYGPKGIGALYVRDARNSELVPLIHGGGQELGLRGGTSPTPLIVGLGVAV
EHFPSEASAQQTEFEKIINEYSFSRNSGDNALSTTWNVTFENDDEVKRFT
SERNWLISQGSASNAMSNTPSHVLTAIGLSEAEARRTYRISLPPYKV
Ligand information
Ligand ID
PLP
InChI
InChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
InChIKey
NGVDGCNFYWLIFO-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
Cc1ncc(CO[P](O)(O)=O)c(C=O)c1O
OpenEye OEToolkits 1.5.0
Cc1c(c(c(cn1)COP(=O)(O)O)C=O)O
ACDLabs 10.04
O=P(O)(O)OCc1cnc(c(O)c1C=O)C
Formula
C8 H10 N O6 P
Name
PYRIDOXAL-5'-PHOSPHATE;
VITAMIN B6 Phosphate
ChEMBL
CHEMBL82202
DrugBank
DB00114
ZINC
ZINC000001532514
PDB chain
6m4j Chain B Residue 401 [
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Receptor-Ligand Complex Structure
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PDB
6m4j
Structural Analysis of an l-Cysteine Desulfurase from an Ssp DNA Phosphorothioation System.
Resolution
1.8 Å
Binding residue
(original residue number in PDB)
G69 A70 S71 H99 D175 A177 Q178 S198 H200 K201
Binding residue
(residue number reindexed from 1)
G68 A69 S70 H98 D174 A176 Q177 S197 H199 K200
Annotation score
4
External links
PDB
RCSB:6m4j
,
PDBe:6m4j
,
PDBj:6m4j
PDBsum
6m4j
PubMed
32345643
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