Structure of PDB 6lg1 Chain B Binding Site BS01

Receptor Information
>6lg1 Chain B (length=425) Species: 50518 (Landoltia punctata) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AVPHVALLPSSGMGHLTPFLRLAAALASHGCVITFITPTPVVSAAEARHV
EAFISSSPLFRRLEFPLLPFSDDPFFLQFERISRSARHLGPVLSSVSPPL
SALILDVTLTSSILPIAAEISLPAYILFTSSAGMLSLCLSYPEIAASGTI
KIPGVAEDLAPSSLPQPLRDPRNLFTGQFIENGRAMARADGIIINTWEAL
EPATLAALQGSKAVSGFPLVIPVGPLLAAADDLVIPWLDAQPASSVVFVS
FGSRTALSAEQLRELAAGLESSGCRFLWVLELLGEGFLQRVEWKGKVVSG
WVDQRAVLDHPSVGGFVSHCGWNSVTEAALGGMRVLAWPRHGDQRINAMV
VEKSGLGKWPSLWTWEGDDEIVRREEIAGRVAELMASPAAAAAAAKVKEE
AVRAATAGGSSQRQLEDLVSRFTCS
Ligand information
Ligand IDUDP
InChIInChI=1S/C9H14N2O12P2/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKeyXCCTYIAWTASOJW-XVFCMESISA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
CACTVS 3.370O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
CACTVS 3.370O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
OpenEye OEToolkits 1.7.0C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)O)O)O
ACDLabs 12.01O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)NC(=O)C=C1)C(O)C2O
FormulaC9 H14 N2 O12 P2
NameURIDINE-5'-DIPHOSPHATE
ChEMBLCHEMBL130266
DrugBankDB03435
ZINCZINC000004490939
PDB chain6lg1 Chain B Residue 500 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lg1 Dissection of the general two-step di- C -glycosylation pathway for the biosynthesis of (iso)schaftosides in higher plants.
Resolution3.047 Å
Binding residue
(original residue number in PDB)		G40 S293 W358 V359 Q361 H376 G378 N380 S381 E384
Binding residue
(residue number reindexed from 1)		G14 S253 W301 V302 Q304 H319 G321 N323 S324 E327
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Nov 15 09:56:53 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6lg1', asym_id = 'B', bs = 'BS01', title = 'Dissection of the general two-step di- C -glycos...osynthesis of (iso)schaftosides in higher plants.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6lg1', asym_id='B', bs='BS01', title='Dissection of the general two-step di- C -glycos...osynthesis of (iso)schaftosides in higher plants.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0008194,0035251', uniprot = '', pdbid = '6lg1', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008194,0035251', uniprot='', pdbid='6lg1', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>