Structure of PDB 6k28 Chain B Binding Site BS01

Receptor Information
>6k28 Chain B (length=232) Species: 573 (Klebsiella pneumoniae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PVAHLRHLLRAHSPLVHCMTNDVVQTFTANVLLAVGASPAMVIDPREAAQ
FAAIADALLINVGTLTEDRAVAMRAAVEHARQAGKPWTLDPVAVGALTVR
TAFCHELLALQPAAIRGNASEILALAGTAAAALPAAQALARRLATVVAVT
GEVDYVTDGERVLSVAGGNPLMTRVVGTGCALSAVVAASAALPGDRLENV
AAACGLMKQAGEIAARQGGPGSFIPAFLDALY
Ligand information
Ligand IDTZE
InChIInChI=1S/C6H9NOS/c1-5-6(2-3-8)9-4-7-5/h4,8H,2-3H2,1H3
InChIKeyBKAWJIRCKVUVED-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0Cc1c(scn1)CCO
CACTVS 3.341Cc1ncsc1CCO
ACDLabs 10.04OCCc1scnc1C
FormulaC6 H9 N O S
Name2-(4-METHYL-THIAZOL-5-YL)-ETHANOL;
4-METHYL-5-HYDROXYETHYLTHIAZOLE
ChEMBLCHEMBL1236482
DrugBankDB02969
ZINCZINC000000160790
PDB chain6k28 Chain A Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6k28 Structural insight of the 5-(Hydroxyethyl)-methylthiazole kinase ThiM involving vitamin B1 biosynthetic pathway from the Klebsiella pneumoniae.
Resolution2.002 Å
Binding residue
(original residue number in PDB)		N29 G71 C200
Binding residue
(residue number reindexed from 1)		N21 G63 C180
Annotation score5
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Mon Dec 2 04:11:21 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6k28', asym_id = 'B', bs = 'BS01', title = 'Structural insight of the 5-(Hydroxyethyl)-methy...ynthetic pathway from the Klebsiella pneumoniae. '
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6k28', asym_id='B', bs='BS01', title='Structural insight of the 5-(Hydroxyethyl)-methy...ynthetic pathway from the Klebsiella pneumoniae. ')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0000287,0004417,0005524,0009228', uniprot = '', pdbid = '6k28', asym_id = 'B'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000287,0004417,0005524,0009228', uniprot='', pdbid='6k28', asym_id='B')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>