Structure of PDB 6jg8 Chain B Binding Site BS01

Receptor Information
>6jg8 Chain B (length=393) Species: 66797 (Spbetavirus SPbeta) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MMELIRIAMKKDLENDNSLMNKWATVAGLKNPNPLYDFLNHDGKTFNEFS
SIVNIVKSQYPDREYELMKDYCLNLDVKTKAARSALEYADANMFFEIEDV
LIDSMISCSNMKSKEYGKVYKIHRELSNSVITEFEAVKRLGKLNIKTPEM
NSFSRLLLLYHYLSTGNFSPMAQLIKQIDLSEISENMYIRNTYQTRVHVL
MSNIKLNENSLEECREYSKKALESTNILRFQVFSYLTIGNSLLFSNYELA
QENFLKGLSISVQNENYNMIFQQALCFLNNVWRKENKWINFESDSIMDLQ
EQAHCFINFNENSKAKEVLDKLDLLVHNDNELAMHYYLKGRLEQNKACFY
SSIEYFKKSNDKFLIRLPLLELQKMGENQKLLELLLLLEHHHH
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB6jg8 Structural insights into DNA recognition by AimR of the arbitrium communication system in the SPbeta phage.
Resolution2.097 Å
Binding residue
(original residue number in PDB)		L28 K29 N30 N32 P33 K43 T44 F45 N46
Binding residue
(residue number reindexed from 1)		L29 K30 N31 N33 P34 K44 T45 F46 N47
Binding affinityPDBbind-CN: Kd=125.89nM
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0098689 latency-replication decision

View graph for
Biological Process
External links
PDB RCSB:6jg8, PDBe:6jg8, PDBj:6jg8
PDBsum6jg8
PubMed31149347
UniProtO64094|AIMR_BPSPB AimR transcriptional regulator (Gene Name=aimR)

[Back to BioLiP]