Structure of PDB 6jf5 Chain B Binding Site BS01

Receptor Information
>6jf5 Chain B (length=158) Species: 470 (Acinetobacter baumannii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SVVLPVAKRGEDILKLIAAPVSANELNSNWLYQLADAMHATMLERNGVGI
AAPQVYISKRVIIVASRPNPRYPDAPEMNAVVMVNPEILEFSSETCLGEE
GCLSVPDERGQVERAEMVKVKYLTLQGEAVETIFHGFPARIVQHEVDHLN
GILFVERI
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain6jf5 Chain B Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB6jf5 K2U bound crystal structure of class I type b peptide deformylase from Acinetobacter baumannii
Resolution2.0 Å
Binding residue
(original residue number in PDB)		C103 H145 H149
Binding residue
(residue number reindexed from 1)		C102 H144 H148
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) G50 Q55 C103 L104 H145 E146 H149
Catalytic site (residue number reindexed from 1) G49 Q54 C102 L103 H144 E145 H148
Enzyme Commision number 3.5.1.88: peptide deformylase.
Gene Ontology
Molecular Function
GO:0016787 hydrolase activity
GO:0042586 peptide deformylase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0018206 peptidyl-methionine modification

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Molecular Function
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Biological Process
External links
PDB RCSB:6jf5, PDBe:6jf5, PDBj:6jf5
PDBsum6jf5
PubMed
UniProtA0A098SKQ8

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